.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2476_30x719_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 620 patterns found. (out of a total of 719 sites) . 115 sites without polymorphism (15.99%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 44Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -24774.5534] [Alpha ][ 0.568788] . ( 3 sec) [ -24770.6356] [ 4912] [depth= 2] . ( 4 sec) [ -24754.7924] [ 4911] [depth= 1] . ( 5 sec) [ -24750.8991] [ 4912] [depth= 1] . ( 8 sec) [ -24750.3251] [ 4917] [depth= 1] . ( 9 sec) [ -24749.7088] [ 4922] [depth= 1] . ( 10 sec) [ -24749.1434] [ 4918] [depth= 3] . ( 12 sec) [ -24745.1957] [ 4935] [depth= 1] . ( 12 sec) [ -24735.6770] [ 4918] [depth= 1] . ( 13 sec) [ -24725.4325] [ 4918] [depth= 2] . ( 15 sec) [ -24722.7390] [ 4922] [depth= 1] . ( 15 sec) [ -24720.7531] [ 4918] [depth= 1] . ( 17 sec) [ -24719.3563] [ 4921] [depth= 2] . ( 18 sec) [ -24711.0539] [ 4914] [depth= 2] . ( 19 sec) [ -24709.7604] [ 4917] [depth= 1] . ( 19 sec) [ -24703.2458] [ 4921] [depth= 1] . ( 20 sec) [ -24691.7815] [ 4925] [depth= 1] . ( 22 sec) [ -24682.0022] [ 4926] [depth= 1] . ( 22 sec) [ -24677.6305] [ 4925] [depth= 1] . ( 23 sec) [ -24677.2427] [ 4921] [depth= 1] . ( 24 sec) [ -24666.3676] [ 4923] [depth= 4] . ( 27 sec) [ -24665.7809] [ 4926] [depth= 1] . ( 30 sec) [ -24658.7862] [ 4923] [depth= 1] . ( 31 sec) [ -24658.5416] [ 4926] [depth= 1] . ( 31 sec) [ -24658.1349] [ 4922] [depth= 1] . ( 32 sec) [ -24655.6356] [ 4926] [depth= 1] . ( 33 sec) [ -24655.5104] [ 4925] [depth= 1] . ( 33 sec) [ -24648.1249] [ 4920] [depth= 1] . ( 35 sec) [ -24647.2387] [ 4923] [depth= 1] . ( 36 sec) [ -24643.6939] [ 4927] [depth= 2] . ( 40 sec) [ -24641.3313] [ 4923] [depth= 1] . ( 42 sec) [ -24638.6431] [ 4926] [depth= 2] . ( 44 sec) [ -24581.3651] [Branch lengths ] . ( 45 sec) [ -24573.5916] [Alpha ][ 0.682758] . ( 50 sec) [ -24567.1512] [ 4919] [depth= 1] . ( 61 sec) [ -24558.3976] [ 4921] [depth= 3] . ( 97 sec) [ -24545.7546] [Branch lengths ] . ( 98 sec) [ -24545.6295] [Alpha ][ 0.698976] . ( 100 sec) [ -24544.1948] [ 4920] [depth= 6] . ( 149 sec) [ -24540.7976] [Branch lengths ] . ( 150 sec) [ -24540.7971] [Alpha ][ 0.697836] . ( 201 sec) [ -24539.9444] [Branch lengths ] . ( 201 sec) [ -24539.9444] [Topology ] . ( 205 sec) [ -24534.6494] [Topology ] . ( 208 sec) [ -24530.5271] [Topology ] . ( 212 sec) [ -24529.9490] [Topology ] . ( 216 sec) [ -24529.8280] [Topology ] . ( 219 sec) [ -24529.7965] [Topology ] . ( 223 sec) [ -24529.7876] [Topology ] . ( 227 sec) [ -24529.7850] [Topology ] . ( 227 sec) [ -24529.7722] [Alpha ][ 0.703045] . ( 228 sec) [ -24529.7722] [Topology ] . ( 231 sec) [ -24529.7704] [Topology ] . ( 235 sec) [ -24529.7698] [Topology ] . ( 235 sec) [ -24529.7698] [Alpha ][ 0.703045] . ( 236 sec) [ -24529.7698] [Topology ] . ( 239 sec) [ -24529.7695] [Topology ] . ( 240 sec) [ -24529.7695] [Alpha ][ 0.703045] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -24529.769532. . Printing the most likely tree in file 'proteic_M2476_30x719_2005.phy_phyml_tree.txt'... . Time used 0h4m32s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 271.86user 0.00system 4:33.15elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps