.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2477_39x888_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 638 patterns found. (out of a total of 888 sites) . 262 sites without polymorphism (29.50%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 59Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 2 sec) [ -21417.6215] [Alpha ][ 0.500960] . ( 10 sec) [ -21416.4601] [ 3664] [depth= 1] . ( 12 sec) [ -21410.5283] [ 3661] [depth= 1] . ( 13 sec) [ -21406.6173] [ 3663] [depth= 1] . ( 14 sec) [ -21404.2374] [ 3664] [depth= 1] . ( 15 sec) [ -21401.2712] [ 3661] [depth= 1] . ( 20 sec) [ -21378.0439] [ 3666] [depth= 2] . ( 21 sec) [ -21377.2197] [ 3662] [depth= 2] . ( 22 sec) [ -21363.2171] [ 3661] [depth= 1] . ( 23 sec) [ -21361.9633] [ 3662] [depth= 1] . ( 25 sec) [ -21352.5151] [ 3661] [depth= 1] . ( 35 sec) [ -21351.3660] [ 3665] [depth= 1] . ( 36 sec) [ -21338.3273] [ 3661] [depth= 1] . ( 42 sec) [ -21336.2810] [ 3665] [depth= 1] . ( 42 sec) [ -21327.3395] [ 3661] [depth= 1] . ( 44 sec) [ -21321.8468] [ 3663] [depth= 1] . ( 45 sec) [ -21320.6861] [ 3661] [depth= 1] . ( 48 sec) [ -21318.9662] [ 3667] [depth= 1] . ( 49 sec) [ -21307.7239] [ 3661] [depth= 1] . ( 49 sec) [ -21305.7494] [ 3662] [depth= 1] . ( 52 sec) [ -21305.6432] [ 3661] [depth= 1] . ( 53 sec) [ -21305.1675] [ 3662] [depth= 1] . ( 55 sec) [ -21192.5756] [Branch lengths ] . ( 56 sec) [ -21192.5555] [Alpha ][ 0.505582] . ( 61 sec) [ -21189.2474] [ 3659] [depth= 1] . ( 96 sec) [ -21187.3106] [ 3660] [depth= 1] . ( 105 sec) [ -21167.7756] [Branch lengths ] . ( 106 sec) [ -21167.6534] [Alpha ][ 0.516613] . ( 154 sec) [ -21164.1315] [Branch lengths ] . ( 155 sec) [ -21164.1315] [Topology ] . ( 160 sec) [ -21163.7522] [Topology ] . ( 165 sec) [ -21163.6168] [Topology ] . ( 170 sec) [ -21163.5478] [Topology ] . ( 176 sec) [ -21163.5108] [Topology ] . ( 181 sec) [ -21163.4906] [Topology ] . ( 186 sec) [ -21163.4795] [Topology ] . ( 187 sec) [ -21163.4532] [Alpha ][ 0.521977] . ( 187 sec) [ -21163.4532] [Topology ] . ( 193 sec) [ -21163.4454] [Topology ] . ( 198 sec) [ -21163.4414] [Topology ] . ( 203 sec) [ -21163.4391] [Topology ] . ( 208 sec) [ -21163.4378] [Topology ] . ( 214 sec) [ -21163.4371] [Topology ] . ( 214 sec) [ -21163.4371] [Alpha ][ 0.521977] . ( 215 sec) [ -21163.4371] [Topology ] . ( 220 sec) [ -21163.4367] [Topology ] . ( 221 sec) [ -21163.4367] [Alpha ][ 0.521977] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -21163.436730. . Printing the most likely tree in file 'proteic_M2477_39x888_2005.phy_phyml_tree.txt'... . Time used 0h4m26s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 264.03user 0.00system 4:26.73elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps