..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M2478_30x276_2005.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 249 patterns found. (out of a total of 276 sites) 

. 41 sites without polymorphism (14.86%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 18Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    0 sec) [     -8811.1519] [Alpha              ][  0.880454]
. (    1 sec) [     -8799.7211] [ 1681] [depth=    1]
. (    4 sec) [     -8794.0723] [ 1678] [depth=    1]
. (    6 sec) [     -8792.5920] [ 1678] [depth=    1]
. (    7 sec) [     -8791.5164] [ 1678] [depth=    1]
. (    7 sec) [     -8788.1612] [ 1678] [depth=    1]
. (    8 sec) [     -8787.8672] [ 1678] [depth=    1]
. (    9 sec) [     -8787.5915] [ 1679] [depth=    1]
. (   10 sec) [     -8787.1394] [ 1675] [depth=    2]
. (   10 sec) [     -8782.1493] [ 1675] [depth=    1]
. (   10 sec) [     -8781.7047] [ 1675] [depth=    1]
. (   11 sec) [     -8776.8288] [ 1677] [depth=    1]
. (   11 sec) [     -8770.1167] [ 1671] [depth=    1]
. (   14 sec) [     -8768.2046] [ 1672] [depth=    1]
. (   15 sec) [     -8765.3032] [ 1672] [depth=    1]
. (   16 sec) [     -8762.6609] [ 1672] [depth=    1]
. (   17 sec) [     -8761.2050] [ 1671] [depth=    1]
. (   17 sec) [     -8761.0174] [ 1672] [depth=    1]
. (   19 sec) [     -8760.0796] [ 1671] [depth=    1]
. (   22 sec) [     -8729.5163] [Branch lengths     ]
. (   23 sec) [     -8728.7833] [Alpha              ][  0.976436]
. (   30 sec) [     -8728.6757] [ 1668] [depth=    1]
. (   48 sec) [     -8726.7933] [Branch lengths     ]
. (   48 sec) [     -8726.7915] [Alpha              ][  0.981506]
. (   75 sec) [     -8726.7047] [Branch lengths     ]
. (   75 sec) [     -8726.7047] [Topology           ]
. (   77 sec) [     -8725.4580] [Topology           ]
. (   78 sec) [     -8725.3897] [Topology           ]
. (   80 sec) [     -8725.3804] [Topology           ]
. (   82 sec) [     -8725.3785] [Topology           ]
. (   84 sec) [     -8725.3781] [Topology           ]
. (   84 sec) [     -8725.3757] [Alpha              ][  0.987405]
. (   84 sec) [     -8725.3757] [Topology           ]
. (   86 sec) [     -8725.3754] [Topology           ]
. (   86 sec) [     -8725.3754] [Alpha              ][  0.987405]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -8725.375398.

. Printing the most likely tree in file 'proteic_M2478_30x276_2005.phy_phyml_tree.txt'...


. Time used 0h1m41s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
95.84user 0.00system 1:42.35elapsed 93%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps