.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2479_30x627_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 521 patterns found. (out of a total of 627 sites) . 123 sites without polymorphism (19.62%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 37Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -18178.5487] [Alpha ][ 0.611907] . ( 2 sec) [ -18176.6899] [ 3274] [depth= 1] . ( 3 sec) [ -18176.2365] [ 3272] [depth= 1] . ( 4 sec) [ -18173.3351] [ 3274] [depth= 1] . ( 8 sec) [ -18169.5680] [ 3279] [depth= 1] . ( 10 sec) [ -18168.0103] [ 3274] [depth= 1] . ( 16 sec) [ -18163.4481] [ 3273] [depth= 1] . ( 16 sec) [ -18163.3021] [ 3273] [depth= 1] . ( 17 sec) [ -18161.4043] [ 3274] [depth= 1] . ( 17 sec) [ -18158.7458] [ 3273] [depth= 1] . ( 19 sec) [ -18151.5756] [ 3273] [depth= 2] . ( 22 sec) [ -18135.4753] [ 3269] [depth= 2] . ( 22 sec) [ -18133.6824] [ 3272] [depth= 1] . ( 23 sec) [ -18131.0336] [ 3267] [depth= 2] . ( 24 sec) [ -18125.8354] [ 3268] [depth= 1] . ( 24 sec) [ -18118.3604] [ 3263] [depth= 3] . ( 24 sec) [ -18113.1297] [ 3260] [depth= 1] . ( 28 sec) [ -18111.3813] [ 3264] [depth= 1] . ( 28 sec) [ -18105.5944] [ 3260] [depth= 3] . ( 29 sec) [ -18103.9480] [ 3260] [depth= 1] . ( 32 sec) [ -18102.8742] [ 3260] [depth= 1] . ( 34 sec) [ -18070.0648] [Branch lengths ] . ( 35 sec) [ -18066.2468] [Alpha ][ 0.711148] . ( 42 sec) [ -18063.1961] [ 3261] [depth= 2] . ( 48 sec) [ -18062.6789] [ 3262] [depth= 1] . ( 56 sec) [ -18061.8072] [ 3261] [depth= 1] . ( 68 sec) [ -18058.2511] [Branch lengths ] . ( 68 sec) [ -18058.0679] [Alpha ][ 0.734464] . ( 102 sec) [ -18057.3162] [Branch lengths ] . ( 102 sec) [ -18057.3162] [Topology ] . ( 105 sec) [ -18057.2145] [Topology ] . ( 108 sec) [ -18057.1762] [Topology ] . ( 111 sec) [ -18057.1555] [Topology ] . ( 114 sec) [ -18057.1440] [Topology ] . ( 117 sec) [ -18057.1376] [Topology ] . ( 120 sec) [ -18057.1339] [Topology ] . ( 121 sec) [ -18057.0207] [Alpha ][ 0.753094] . ( 121 sec) [ -18057.0207] [Topology ] . ( 124 sec) [ -18057.0029] [Topology ] . ( 127 sec) [ -18056.9939] [Topology ] . ( 130 sec) [ -18056.9889] [Topology ] . ( 133 sec) [ -18056.9861] [Topology ] . ( 136 sec) [ -18056.9845] [Topology ] . ( 139 sec) [ -18056.9836] [Topology ] . ( 140 sec) [ -18056.9790] [Alpha ][ 0.757039] . ( 140 sec) [ -18056.9790] [Topology ] . ( 143 sec) [ -18056.9774] [Topology ] . ( 146 sec) [ -18056.9765] [Topology ] . ( 147 sec) [ -18056.9765] [Alpha ][ 0.757796] . ( 147 sec) [ -18056.9765] [Topology ] . ( 150 sec) [ -18056.9758] [Topology ] . ( 151 sec) [ -18056.9758] [Alpha ][ 0.757796] . Checking for NNIs, optimizing five branches... . ( 176 sec) [ -18056.6146] [Topology ] . Checking for NNIs, optimizing five branches... . ( 203 sec) [ -18056.1621] [Topology ] . Checking for NNIs, optimizing five branches... . ( 229 sec) [ -18056.0649] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -18056.064925. . Printing the most likely tree in file 'proteic_M2479_30x627_2005.phy_phyml_tree.txt'... . Time used 0h4m16s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 254.63user 0.00system 4:16.11elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps