.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2512_14x717_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 703 patterns found. (out of a total of 717 sites) . 39 sites without polymorphism (5.44%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 21Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -20898.1075] [Alpha ][ 1.719622] . ( 2 sec) [ -20895.9923] [ 4555] [depth= 1] . ( 3 sec) [ -20889.3372] [ 4547] [depth= 2] . ( 3 sec) [ -20888.5728] [ 4552] [depth= 1] . ( 5 sec) [ -20867.7868] [ 4559] [depth= 3] . ( 6 sec) [ -20856.0045] [ 4569] [depth= 1] . ( 6 sec) [ -20765.8045] [ 4559] [depth= 1] . ( 7 sec) [ -20510.5376] [ 4542] [depth= 1] . ( 7 sec) [ -20497.8122] [ 4539] [depth= 1] . ( 8 sec) [ -20290.4169] [ 4535] [depth= 1] . ( 8 sec) [ -20246.4177] [ 4531] [depth= 1] . ( 10 sec) [ -20210.5193] [ 4535] [depth= 2] . ( 11 sec) [ -20210.2034] [ 4539] [depth= 1] . ( 13 sec) [ -20130.0567] [Branch lengths ] . ( 13 sec) [ -20128.9883] [Alpha ][ 1.563589] . ( 17 sec) [ -20127.4467] [ 4540] [depth= 1] . ( 17 sec) [ -20125.9501] [ 4537] [depth= 1] . ( 23 sec) [ -20121.8097] [ 4532] [depth= 1] . ( 25 sec) [ -20120.1590] [ 4532] [depth= 1] . ( 27 sec) [ -20119.7832] [ 4532] [depth= 1] . ( 31 sec) [ -20105.7485] [Branch lengths ] . ( 31 sec) [ -20104.0472] [Alpha ][ 1.399967] . ( 43 sec) [ -20104.0291] [ 4532] [depth= 1] . ( 48 sec) [ -20100.3666] [Branch lengths ] . ( 48 sec) [ -20099.9527] [Alpha ][ 1.328237] . ( 63 sec) [ -20099.8226] [ 4532] [depth= 1] . ( 67 sec) [ -20099.0255] [Branch lengths ] . ( 68 sec) [ -20098.9412] [Alpha ][ 1.298255] . ( 85 sec) [ -20098.5912] [Branch lengths ] . ( 85 sec) [ -20098.5912] [Topology ] . ( 87 sec) [ -20098.5244] [Topology ] . ( 89 sec) [ -20098.4864] [Topology ] . ( 91 sec) [ -20098.4592] [Topology ] . ( 93 sec) [ -20098.4386] [Topology ] . ( 95 sec) [ -20098.4225] [Topology ] . ( 97 sec) [ -20098.4097] [Topology ] . ( 97 sec) [ -20098.3651] [Alpha ][ 1.276249] . ( 97 sec) [ -20098.3651] [Topology ] . ( 99 sec) [ -20098.3366] [Topology ] . ( 101 sec) [ -20098.3233] [Topology ] . ( 103 sec) [ -20098.3143] [Topology ] . ( 105 sec) [ -20098.3074] [Topology ] . ( 107 sec) [ -20098.3019] [Topology ] . ( 109 sec) [ -20098.2973] [Topology ] . ( 109 sec) [ -20098.2870] [Alpha ][ 1.265798] . ( 110 sec) [ -20098.2870] [Topology ] . ( 112 sec) [ -20098.2784] [Topology ] . ( 113 sec) [ -20098.2738] [Topology ] . ( 115 sec) [ -20098.2704] [Topology ] . ( 117 sec) [ -20098.2676] [Topology ] . ( 119 sec) [ -20098.2654] [Topology ] . ( 121 sec) [ -20098.2634] [Topology ] . ( 122 sec) [ -20098.2606] [Alpha ][ 1.260348] . ( 122 sec) [ -20098.2606] [Topology ] . ( 124 sec) [ -20098.2575] [Topology ] . ( 126 sec) [ -20098.2557] [Topology ] . ( 128 sec) [ -20098.2542] [Topology ] . ( 130 sec) [ -20098.2530] [Topology ] . ( 132 sec) [ -20098.2519] [Topology ] . ( 134 sec) [ -20098.2510] [Topology ] . ( 134 sec) [ -20098.2502] [Alpha ][ 1.257423] . ( 134 sec) [ -20098.2502] [Topology ] . ( 136 sec) [ -20098.2490] [Topology ] . ( 138 sec) [ -20098.2482] [Topology ] . ( 139 sec) [ -20098.2481] [Alpha ][ 1.256165] . ( 139 sec) [ -20098.2481] [Topology ] . ( 141 sec) [ -20098.2473] [Topology ] . ( 141 sec) [ -20098.2473] [Alpha ][ 1.254909] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -20098.247253. . Printing the most likely tree in file 'proteic_M2512_14x717_2006.phy_phyml_tree.txt'... . Time used 0h2m52s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 171.38user 0.00system 2:52.68elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps