.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2558_27x1060_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 746 patterns found. (out of a total of 1060 sites) . 362 sites without polymorphism (34.15%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 47Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -37472.1429] [Alpha ][ 0.689004] . ( 2 sec) [ -37441.7027] [ 7658] [depth= 1] . ( 3 sec) [ -37425.7851] [ 7666] [depth= 1] . ( 7 sec) [ -37424.7015] [ 7669] [depth= 1] . ( 10 sec) [ -37395.6519] [ 7666] [depth= 1] . ( 12 sec) [ -37395.0472] [ 7667] [depth= 2] . ( 14 sec) [ -37390.6364] [ 7666] [depth= 1] . ( 19 sec) [ -37369.2911] [ 7662] [depth= 2] . ( 20 sec) [ -37358.2377] [ 7651] [depth= 1] . ( 21 sec) [ -37357.1536] [ 7644] [depth= 1] . ( 22 sec) [ -37353.8751] [ 7645] [depth= 1] . ( 24 sec) [ -37350.7777] [ 7648] [depth= 1] . ( 27 sec) [ -37344.0683] [ 7652] [depth= 2] . ( 28 sec) [ -37341.7529] [ 7650] [depth= 1] . ( 29 sec) [ -37340.7846] [ 7645] [depth= 2] . ( 29 sec) [ -37329.8233] [ 7640] [depth= 1] . ( 31 sec) [ -37328.9733] [ 7631] [depth= 1] . ( 33 sec) [ -37324.1842] [ 7636] [depth= 1] . ( 34 sec) [ -37312.8221] [ 7631] [depth= 1] . ( 35 sec) [ -37308.1170] [ 7632] [depth= 1] . ( 36 sec) [ -37303.7814] [ 7638] [depth= 1] . ( 41 sec) [ -37234.4286] [Branch lengths ] . ( 42 sec) [ -37233.5684] [Alpha ][ 0.656739] . ( 53 sec) [ -37230.5585] [ 7641] [depth= 1] . ( 61 sec) [ -37227.8388] [ 7637] [depth= 1] . ( 62 sec) [ -37225.8700] [ 7644] [depth= 1] . ( 63 sec) [ -37221.8936] [ 7644] [depth= 2] . ( 67 sec) [ -37220.5523] [ 7649] [depth= 1] . ( 69 sec) [ -37216.6040] [ 7644] [depth= 1] . ( 75 sec) [ -37215.3248] [ 7645] [depth= 5] . ( 83 sec) [ -37214.2668] [ 7646] [depth= 1] . ( 87 sec) [ -37198.6436] [Branch lengths ] . ( 88 sec) [ -37197.7183] [Alpha ][ 0.624943] . ( 148 sec) [ -37193.2540] [Branch lengths ] . ( 148 sec) [ -37193.2540] [Topology ] . ( 152 sec) [ -37192.4330] [Topology ] . ( 156 sec) [ -37192.0789] [Topology ] . ( 160 sec) [ -37191.8886] [Topology ] . ( 163 sec) [ -37191.7808] [Topology ] . ( 167 sec) [ -37191.7185] [Topology ] . ( 171 sec) [ -37191.6814] [Topology ] . ( 172 sec) [ -37190.1302] [Alpha ][ 0.585852] . ( 172 sec) [ -37190.1302] [Topology ] . ( 176 sec) [ -37189.4975] [Topology ] . ( 180 sec) [ -37189.2439] [Topology ] . ( 184 sec) [ -37189.1240] [Topology ] . ( 187 sec) [ -37189.0654] [Topology ] . ( 191 sec) [ -37189.0356] [Topology ] . ( 195 sec) [ -37189.0197] [Topology ] . ( 196 sec) [ -37188.4951] [Alpha ][ 0.564231] . ( 196 sec) [ -37188.4951] [Topology ] . ( 200 sec) [ -37188.2354] [Topology ] . ( 204 sec) [ -37188.1354] [Topology ] . ( 208 sec) [ -37188.0896] [Topology ] . ( 211 sec) [ -37188.0677] [Topology ] . ( 215 sec) [ -37188.0566] [Topology ] . ( 219 sec) [ -37188.0507] [Topology ] . ( 220 sec) [ -37187.8241] [Alpha ][ 0.550604] . ( 220 sec) [ -37187.8241] [Topology ] . ( 224 sec) [ -37187.7111] [Topology ] . ( 228 sec) [ -37187.6690] [Topology ] . ( 231 sec) [ -37187.6501] [Topology ] . ( 235 sec) [ -37187.6411] [Topology ] . ( 239 sec) [ -37187.6365] [Topology ] . ( 243 sec) [ -37187.6340] [Topology ] . ( 243 sec) [ -37187.5300] [Alpha ][ 0.541711] . ( 244 sec) [ -37187.5300] [Topology ] . ( 248 sec) [ -37187.4790] [Topology ] . ( 251 sec) [ -37187.4603] [Topology ] . ( 255 sec) [ -37187.4520] [Topology ] . ( 259 sec) [ -37187.4481] [Topology ] . ( 263 sec) [ -37187.4460] [Topology ] . ( 266 sec) [ -37187.4449] [Topology ] . ( 267 sec) [ -37187.3950] [Alpha ][ 0.535245] . ( 268 sec) [ -37187.3950] [Topology ] . ( 271 sec) [ -37187.3675] [Topology ] . ( 275 sec) [ -37187.3576] [Topology ] . ( 279 sec) [ -37187.3533] [Topology ] . ( 283 sec) [ -37187.3512] [Topology ] . ( 286 sec) [ -37187.3501] [Topology ] . ( 290 sec) [ -37187.3495] [Topology ] . ( 291 sec) [ -37187.3269] [Alpha ][ 0.530911] . ( 291 sec) [ -37187.3269] [Topology ] . ( 295 sec) [ -37187.3140] [Topology ] . ( 299 sec) [ -37187.3094] [Topology ] . ( 303 sec) [ -37187.3073] [Topology ] . ( 306 sec) [ -37187.3063] [Topology ] . ( 307 sec) [ -37187.2978] [Alpha ][ 0.528264] . ( 308 sec) [ -37187.2978] [Topology ] . ( 311 sec) [ -37187.2913] [Topology ] . ( 315 sec) [ -37187.2889] [Topology ] . ( 319 sec) [ -37187.2877] [Topology ] . ( 323 sec) [ -37187.2872] [Topology ] . ( 323 sec) [ -37187.2829] [Alpha ][ 0.526362] . ( 324 sec) [ -37187.2829] [Topology ] . ( 328 sec) [ -37187.2794] [Topology ] . ( 331 sec) [ -37187.2781] [Topology ] . ( 335 sec) [ -37187.2775] [Topology ] . ( 336 sec) [ -37187.2750] [Alpha ][ 0.524918] . ( 336 sec) [ -37187.2750] [Topology ] . ( 340 sec) [ -37187.2729] [Topology ] . ( 344 sec) [ -37187.2721] [Topology ] . ( 344 sec) [ -37187.2714] [Alpha ][ 0.524143] . ( 345 sec) [ -37187.2714] [Topology ] . ( 348 sec) [ -37187.2702] [Topology ] . ( 352 sec) [ -37187.2697] [Topology ] . ( 353 sec) [ -37187.2694] [Alpha ][ 0.523553] . ( 353 sec) [ -37187.2694] [Topology ] . ( 357 sec) [ -37187.2687] [Topology ] . ( 358 sec) [ -37187.2687] [Alpha ][ 0.523553] . Checking for NNIs, optimizing five branches... . ( 400 sec) [ -37186.8051] [Topology ] . Checking for NNIs, optimizing five branches... . ( 440 sec) [ -37186.2686] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -37186.268608. . Printing the most likely tree in file 'proteic_M2558_27x1060_2005.phy_phyml_tree.txt'... . Time used 0h8m1s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 478.64user 0.00system 8:01.43elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps