..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M2638_18x378_2006.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 75 patterns found. (out of a total of 378 sites) 

. 321 sites without polymorphism (84.92%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 3Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    0 sec) [     -1700.8671] [Alpha              ][  0.500960]
. (    6 sec) [     -1700.1272] [   82] [depth=    1]
. (    7 sec) [     -1699.4578] [   82] [depth=    1]
. (    7 sec) [     -1698.1292] [   80] [depth=    3]
. (    7 sec) [     -1697.8197] [   81] [depth=    3]
. (    8 sec) [     -1696.9534] [   81] [depth=    2]
. (   11 sec) [     -1696.8905] [   81] [depth=    5]
. (   13 sec) [     -1696.2921] [   81] [depth=    3]
. (   13 sec) [     -1696.2548] [   82] [depth=    1]
. (   14 sec) [     -1696.0512] [   82] [depth=    1]
. (   14 sec) [     -1695.9506] [   82] [depth=    1]
. (   14 sec) [     -1695.8680] [   82] [depth=    1]
. (   17 sec) [     -1695.0532] [Branch lengths     ]
. (   17 sec) [     -1692.5539] [Alpha              ][  0.250961]
. (   22 sec) [     -1692.0332] [   81] [depth=    1]
. (   41 sec) [     -1691.8160] [Branch lengths     ]
. (   41 sec) [     -1691.4946] [Alpha              ][  0.172623]
. (   66 sec) [     -1691.4860] [Branch lengths     ]
. (   66 sec) [     -1691.4860] [Topology           ]
. (   66 sec) [     -1691.4857] [Topology           ]
. (   66 sec) [     -1691.4855] [Alpha              ][  0.170926]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -1691.485546.

. Printing the most likely tree in file 'proteic_M2638_18x378_2006.phy_phyml_tree.txt'...


. Time used 0h1m9s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
68.31user 0.00system 1:08.97elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps