..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M2639_19x331_2006.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 227 patterns found. (out of a total of 331 sites) 

. 124 sites without polymorphism (37.46%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 10Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    0 sec) [     -5780.2367] [Alpha              ][  0.500960]
. (    3 sec) [     -5774.8860] [  941] [depth=    2]
. (    4 sec) [     -5767.3329] [  943] [depth=    1]
. (    4 sec) [     -5766.6547] [  944] [depth=    2]
. (    4 sec) [     -5763.2682] [  944] [depth=    2]
. (    4 sec) [     -5762.3342] [  945] [depth=    2]
. (    5 sec) [     -5758.4246] [  941] [depth=    2]
. (    5 sec) [     -5757.6473] [  939] [depth=    1]
. (    9 sec) [     -5756.4267] [  938] [depth=    1]
. (   10 sec) [     -5756.2650] [  939] [depth=    1]
. (   10 sec) [     -5740.6467] [Branch lengths     ]
. (   10 sec) [     -5740.5207] [Alpha              ][  0.524174]
. (   25 sec) [     -5739.8544] [Branch lengths     ]
. (   25 sec) [     -5739.8544] [Topology           ]
. (   26 sec) [     -5739.8424] [Topology           ]
. (   27 sec) [     -5739.8402] [Topology           ]
. (   28 sec) [     -5739.8394] [Topology           ]
. (   28 sec) [     -5739.8313] [Alpha              ][  0.530438]
. (   28 sec) [     -5739.8313] [Topology           ]
. (   29 sec) [     -5739.8294] [Topology           ]
. (   30 sec) [     -5739.8286] [Topology           ]
. (   30 sec) [     -5739.8285] [Alpha              ][  0.531172]
. (   30 sec) [     -5739.8285] [Topology           ]
. (   31 sec) [     -5739.8280] [Topology           ]
. (   31 sec) [     -5739.8280] [Alpha              ][  0.531703]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -5739.828022.

. Printing the most likely tree in file 'proteic_M2639_19x331_2006.phy_phyml_tree.txt'...


. Time used 0h0m38s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
38.02user 0.00system 0:38.69elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps