..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1373_23x392_2003.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 206 patterns found. (out of a total of 392 sites) 

. 200 sites without polymorphism (51.02%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 11Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    0 sec) [     -3571.4717] [Alpha              ][  0.500960]
. (    2 sec) [     -3555.7984] [  459] [depth=    1]
. (    2 sec) [     -3555.0067] [  455] [depth=    8]
. (    2 sec) [     -3548.9171] [  456] [depth=    1]
. (    3 sec) [     -3547.0823] [  456] [depth=    1]
. (    3 sec) [     -3543.5837] [  455] [depth=    2]
. (    4 sec) [     -3542.9287] [  455] [depth=    1]
. (    5 sec) [     -3542.7076] [  455] [depth=    1]
. (    5 sec) [     -3542.6975] [  455] [depth=    1]
. (    5 sec) [     -3542.6463] [  455] [depth=    1]
. (    6 sec) [     -3542.3849] [  455] [depth=    1]
. (    7 sec) [     -3542.2916] [  455] [depth=    1]
. (    9 sec) [     -3535.7494] [Branch lengths     ]
. (    9 sec) [     -3535.7440] [Alpha              ][  0.507815]
. (   12 sec) [     -3535.1492] [  455] [depth=    5]
. (   13 sec) [     -3535.1369] [  455] [depth=    1]
. (   14 sec) [     -3535.1257] [  455] [depth=    1]
. (   18 sec) [     -3534.6588] [Branch lengths     ]
. (   19 sec) [     -3534.6581] [Alpha              ][  0.510233]
. (   22 sec) [     -3533.2046] [  458] [depth=    5]
. (   26 sec) [     -3533.1848] [  458] [depth=    2]
. (   28 sec) [     -3533.0768] [Branch lengths     ]
. (   28 sec) [     -3533.0752] [Alpha              ][  0.506311]
. (   38 sec) [     -3533.0571] [Branch lengths     ]
. (   38 sec) [     -3533.0571] [Topology           ]
. (   39 sec) [     -3533.0564] [Topology           ]
. (   39 sec) [     -3533.0564] [Alpha              ][  0.506311]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -3533.056383.

. Printing the most likely tree in file 'proteic_M1373_23x392_2003.phy_phyml_tree.txt'...


. Time used 0h0m47s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
46.10user 0.00system 0:47.80elapsed 96%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps