.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1375_23x530_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 370 patterns found. (out of a total of 530 sites) . 201 sites without polymorphism (37.92%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 20Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -7895.0956] [Alpha ][ 0.500960] . ( 2 sec) [ -7872.7451] [ 1229] [depth= 6] . ( 3 sec) [ -7865.3784] [ 1228] [depth= 1] . ( 4 sec) [ -7864.3945] [ 1223] [depth= 5] . ( 4 sec) [ -7853.0041] [ 1226] [depth= 1] . ( 4 sec) [ -7850.7350] [ 1225] [depth= 1] . ( 5 sec) [ -7839.8136] [ 1226] [depth= 1] . ( 6 sec) [ -7836.8768] [ 1225] [depth= 1] . ( 6 sec) [ -7832.5754] [ 1224] [depth= 1] . ( 7 sec) [ -7825.0115] [ 1222] [depth= 1] . ( 8 sec) [ -7821.5439] [ 1223] [depth= 1] . ( 10 sec) [ -7820.7191] [ 1223] [depth= 2] . ( 12 sec) [ -7820.4649] [ 1221] [depth= 1] . ( 13 sec) [ -7819.0141] [ 1222] [depth= 1] . ( 14 sec) [ -7797.8376] [Branch lengths ] . ( 15 sec) [ -7797.4800] [Alpha ][ 0.535007] . ( 16 sec) [ -7786.8081] [ 1219] [depth= 1] . ( 18 sec) [ -7780.0266] [ 1217] [depth= 2] . ( 20 sec) [ -7777.9097] [ 1215] [depth= 2] . ( 20 sec) [ -7774.0669] [ 1215] [depth= 4] . ( 20 sec) [ -7773.0083] [ 1215] [depth= 1] . ( 26 sec) [ -7768.1738] [Branch lengths ] . ( 26 sec) [ -7768.1067] [Alpha ][ 0.550411] . ( 37 sec) [ -7767.7757] [Branch lengths ] . ( 37 sec) [ -7767.7757] [Topology ] . ( 39 sec) [ -7767.7318] [Topology ] . ( 41 sec) [ -7767.7183] [Topology ] . ( 43 sec) [ -7767.7117] [Topology ] . ( 45 sec) [ -7767.7084] [Topology ] . ( 47 sec) [ -7767.7067] [Topology ] . ( 49 sec) [ -7767.7058] [Topology ] . ( 49 sec) [ -7767.6958] [Alpha ][ 0.556625] . ( 49 sec) [ -7767.6958] [Topology ] . ( 51 sec) [ -7767.6945] [Topology ] . ( 53 sec) [ -7767.6939] [Topology ] . ( 53 sec) [ -7767.6939] [Alpha ][ 0.556625] . ( 53 sec) [ -7767.6939] [Topology ] . ( 55 sec) [ -7767.6936] [Topology ] . ( 55 sec) [ -7767.6936] [Alpha ][ 0.557182] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -7767.693577. . Printing the most likely tree in file 'proteic_M1375_23x530_2003.phy_phyml_tree.txt'... . Time used 0h1m10s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 69.65user 0.00system 1:10.98elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps