.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1376_36x484_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 392 patterns found. (out of a total of 484 sites) . 132 sites without polymorphism (27.27%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 34Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -11637.9226] [Alpha ][ 0.518665] . ( 3 sec) [ -11631.6742] [ 1985] [depth= 2] . ( 3 sec) [ -11621.6295] [ 1984] [depth= 1] . ( 6 sec) [ -11620.5885] [ 1982] [depth= 1] . ( 7 sec) [ -11611.8116] [ 1988] [depth= 2] . ( 8 sec) [ -11610.1709] [ 1989] [depth= 2] . ( 8 sec) [ -11603.1111] [ 1983] [depth= 2] . ( 10 sec) [ -11600.1505] [ 1983] [depth= 1] . ( 12 sec) [ -11599.1084] [ 1984] [depth= 1] . ( 18 sec) [ -11597.4832] [ 1986] [depth= 1] . ( 19 sec) [ -11595.5446] [ 1984] [depth= 1] . ( 22 sec) [ -11594.4505] [ 1986] [depth= 1] . ( 23 sec) [ -11589.8059] [ 1985] [depth= 1] . ( 25 sec) [ -11585.6906] [ 1983] [depth= 2] . ( 25 sec) [ -11581.0848] [ 1983] [depth= 2] . ( 27 sec) [ -11579.1569] [ 1983] [depth= 1] . ( 30 sec) [ -11539.2603] [Branch lengths ] . ( 31 sec) [ -11536.7972] [Alpha ][ 0.601954] . ( 36 sec) [ -11534.9960] [ 1982] [depth= 1] . ( 49 sec) [ -11534.8441] [ 1982] [depth= 1] . ( 55 sec) [ -11530.6935] [Branch lengths ] . ( 56 sec) [ -11530.5741] [Alpha ][ 0.621769] . ( 80 sec) [ -11529.9670] [Branch lengths ] . ( 80 sec) [ -11529.9670] [Topology ] . ( 83 sec) [ -11529.8903] [Topology ] . ( 86 sec) [ -11529.8612] [Topology ] . ( 89 sec) [ -11529.8461] [Topology ] . ( 92 sec) [ -11529.8380] [Topology ] . ( 96 sec) [ -11529.8337] [Topology ] . ( 99 sec) [ -11529.8313] [Topology ] . ( 99 sec) [ -11529.7693] [Alpha ][ 0.636811] . ( 99 sec) [ -11529.7693] [Topology ] . ( 103 sec) [ -11529.7598] [Topology ] . ( 106 sec) [ -11529.7552] [Topology ] . ( 109 sec) [ -11529.7527] [Topology ] . ( 112 sec) [ -11529.7514] [Topology ] . ( 115 sec) [ -11529.7507] [Topology ] . ( 116 sec) [ -11529.7496] [Alpha ][ 0.638785] . ( 116 sec) [ -11529.7496] [Topology ] . ( 119 sec) [ -11529.7488] [Topology ] . ( 119 sec) [ -11529.7488] [Alpha ][ 0.638785] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -11529.748827. . Printing the most likely tree in file 'proteic_M1376_36x484_2003.phy_phyml_tree.txt'... . Time used 0h2m23s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 140.80user 0.00system 2:24.30elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps