.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1377_19x1566_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 921 patterns found. (out of a total of 1566 sites) . 698 sites without polymorphism (44.57%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 39Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 2 sec) [ -17793.6885] [Alpha ][ 0.500960] . ( 5 sec) [ -17790.9930] [ 2484] [depth= 1] . ( 8 sec) [ -17787.5254] [ 2491] [depth= 6] . ( 8 sec) [ -17779.3488] [ 2498] [depth= 4] . ( 10 sec) [ -17729.6676] [ 2493] [depth= 5] . ( 11 sec) [ -17725.9939] [ 2491] [depth= 2] . ( 12 sec) [ -17718.4898] [ 2487] [depth= 2] . ( 13 sec) [ -17713.1483] [ 2492] [depth= 1] . ( 13 sec) [ -17702.6708] [ 2492] [depth= 1] . ( 14 sec) [ -17700.9986] [ 2489] [depth= 2] . ( 15 sec) [ -17698.0321] [ 2488] [depth= 4] . ( 15 sec) [ -17690.3490] [ 2477] [depth= 1] . ( 17 sec) [ -17674.1598] [ 2477] [depth= 3] . ( 18 sec) [ -17667.8388] [ 2476] [depth= 2] . ( 19 sec) [ -17661.8116] [ 2470] [depth= 5] . ( 20 sec) [ -17655.4514] [ 2470] [depth= 1] . ( 23 sec) [ -17655.3635] [ 2468] [depth= 1] . ( 24 sec) [ -17641.6769] [ 2467] [depth= 2] . ( 25 sec) [ -17639.9454] [ 2466] [depth= 1] . ( 25 sec) [ -17631.6041] [ 2461] [depth= 1] . ( 26 sec) [ -17601.1074] [Branch lengths ] . ( 27 sec) [ -17600.7892] [Alpha ][ 0.522985] . ( 31 sec) [ -17594.2459] [ 2445] [depth= 1] . ( 37 sec) [ -17589.2567] [ 2444] [depth= 3] . ( 37 sec) [ -17587.4098] [ 2443] [depth= 1] . ( 41 sec) [ -17587.3018] [ 2442] [depth= 1] . ( 45 sec) [ -17586.5479] [ 2442] [depth= 1] . ( 46 sec) [ -17578.9909] [Branch lengths ] . ( 47 sec) [ -17578.9525] [Alpha ][ 0.531013] . ( 65 sec) [ -17578.5543] [Branch lengths ] . ( 65 sec) [ -17578.5543] [Topology ] . ( 68 sec) [ -17577.1621] [Topology ] . ( 72 sec) [ -17576.9464] [Topology ] . ( 75 sec) [ -17576.6248] [Topology ] . ( 78 sec) [ -17575.0811] [Topology ] . ( 82 sec) [ -17569.8566] [Topology ] . ( 85 sec) [ -17558.2128] [Topology ] . ( 88 sec) [ -17551.9797] [Topology ] . ( 89 sec) [ -17551.9756] [Alpha ][ 0.533610] . ( 89 sec) [ -17551.9756] [Topology ] . ( 92 sec) [ -17551.5718] [Topology ] . ( 96 sec) [ -17551.5337] [Topology ] . ( 99 sec) [ -17551.5297] [Topology ] . ( 103 sec) [ -17551.5292] [Topology ] . ( 103 sec) [ -17551.5292] [Alpha ][ 0.533610] . ( 103 sec) [ -17551.5292] [Topology ] . ( 107 sec) [ -17551.5291] [Topology ] . ( 107 sec) [ -17551.5291] [Alpha ][ 0.533610] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -17551.529124. . Printing the most likely tree in file 'proteic_M1377_19x1566_2003.phy_phyml_tree.txt'... . Time used 0h2m15s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 132.03user 0.00system 2:15.13elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps