..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1378_18x1561_2003.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 855 patterns found. (out of a total of 1561 sites) 

. 765 sites without polymorphism (49.01%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 34Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    1 sec) [    -16272.8201] [Alpha              ][  0.500960]
. (    5 sec) [    -16264.1231] [ 2165] [depth=    5]
. (    6 sec) [    -16247.5499] [ 2160] [depth=    3]
. (    7 sec) [    -16206.3558] [ 2156] [depth=    2]
. (    8 sec) [    -16188.7553] [ 2153] [depth=    2]
. (    9 sec) [    -16172.6647] [ 2156] [depth=    1]
. (    9 sec) [    -16159.8939] [ 2154] [depth=    2]
. (   10 sec) [    -16152.7174] [ 2157] [depth=    1]
. (   10 sec) [    -16152.5892] [ 2152] [depth=    6]
. (   11 sec) [    -16107.1498] [ 2147] [depth=    4]
. (   12 sec) [    -16105.9109] [ 2144] [depth=    3]
. (   13 sec) [    -16089.6447] [ 2141] [depth=    1]
. (   13 sec) [    -16087.1063] [ 2134] [depth=    1]
. (   18 sec) [    -16078.6352] [ 2131] [depth=    1]
. (   19 sec) [    -16074.7818] [ 2131] [depth=    3]
. (   20 sec) [    -16022.7175] [Branch lengths     ]
. (   21 sec) [    -16021.5047] [Alpha              ][  0.459037]
. (   38 sec) [    -16016.8621] [Branch lengths     ]
. (   38 sec) [    -16016.8621] [Topology           ]
. (   42 sec) [    -16016.7293] [Topology           ]
. (   45 sec) [    -16016.6943] [Topology           ]
. (   47 sec) [    -16016.6800] [Topology           ]
. (   50 sec) [    -16016.6739] [Topology           ]
. (   53 sec) [    -16016.6712] [Topology           ]
. (   56 sec) [    -16016.6700] [Topology           ]
. (   56 sec) [    -16016.6535] [Alpha              ][  0.463722]
. (   57 sec) [    -16016.6535] [Topology           ]
. (   59 sec) [    -16016.6522] [Topology           ]
. (   62 sec) [    -16016.6518] [Topology           ]
. (   63 sec) [    -16016.6518] [Alpha              ][  0.463722]
. (   63 sec) [    -16016.6518] [Topology           ]
. (   67 sec) [    -16016.6515] [Topology           ]
. (   68 sec) [    -16016.6515] [Alpha              ][  0.463722]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -16016.651540.

. Printing the most likely tree in file 'proteic_M1378_18x1561_2003.phy_phyml_tree.txt'...


. Time used 0h1m57s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
87.36user 0.00system 1:57.46elapsed 74%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps