..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1381_9x1557_2003.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 695 patterns found. (out of a total of 1557 sites) 

. 829 sites without polymorphism (53.24%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 12Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    1 sec) [    -12145.2942] [Alpha              ][  0.516381]
. (    2 sec) [    -12144.5726] [ 1445] [depth=    1]
. (    3 sec) [    -12137.3493] [ 1446] [depth=    1]
. (    4 sec) [    -12130.1530] [ 1442] [depth=    1]
. (    4 sec) [    -12096.2709] [ 1439] [depth=    4]
. (    6 sec) [    -12079.4739] [Branch lengths     ]
. (    6 sec) [    -12078.6654] [Alpha              ][  0.567370]
. (   10 sec) [    -12078.0238] [Branch lengths     ]
. (   10 sec) [    -12078.0238] [Topology           ]
. (   11 sec) [    -12078.0026] [Topology           ]
. (   12 sec) [    -12077.9996] [Topology           ]
. (   13 sec) [    -12077.9988] [Topology           ]
. (   13 sec) [    -12077.9977] [Alpha              ][  0.569292]
. (   13 sec) [    -12077.9977] [Topology           ]
. (   14 sec) [    -12077.9974] [Topology           ]
. (   14 sec) [    -12077.9974] [Alpha              ][  0.569292]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -12077.997382.

. Printing the most likely tree in file 'proteic_M1381_9x1557_2003.phy_phyml_tree.txt'...


. Time used 0h0m25s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
20.60user 0.00system 0:24.84elapsed 82%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps