..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1382_9x1560_2003.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 719 patterns found. (out of a total of 1560 sites) 

. 822 sites without polymorphism (52.69%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 13Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    0 sec) [    -12403.8773] [Alpha              ][  0.502812]
. (    1 sec) [    -12403.7725] [ 1506] [depth=    2]
. (    2 sec) [    -12400.3129] [ 1506] [depth=    1]
. (    2 sec) [    -12362.6208] [ 1504] [depth=    3]
. (    3 sec) [    -12351.1184] [ 1491] [depth=    1]
. (    3 sec) [    -12351.0029] [ 1492] [depth=    1]
. (    4 sec) [    -12350.4677] [ 1491] [depth=    1]
. (    6 sec) [    -12336.9622] [Branch lengths     ]
. (    6 sec) [    -12335.8485] [Alpha              ][  0.560134]
. (   10 sec) [    -12335.2172] [Branch lengths     ]
. (   10 sec) [    -12335.2172] [Topology           ]
. (   11 sec) [    -12335.1961] [Topology           ]
. (   12 sec) [    -12335.1905] [Topology           ]
. (   13 sec) [    -12335.1887] [Topology           ]
. (   14 sec) [    -12335.1881] [Topology           ]
. (   14 sec) [    -12335.1844] [Alpha              ][  0.563681]
. (   14 sec) [    -12335.1844] [Topology           ]
. (   15 sec) [    -12335.1841] [Topology           ]
. (   15 sec) [    -12335.1841] [Alpha              ][  0.563681]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -12335.184099.

. Printing the most likely tree in file 'proteic_M1382_9x1560_2003.phy_phyml_tree.txt'...


. Time used 0h0m23s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
22.24user 0.00system 0:23.26elapsed 95%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps