..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1383_11x1561_2003.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 753 patterns found. (out of a total of 1561 sites) 

. 798 sites without polymorphism (51.12%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 17Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    0 sec) [    -13794.2183] [Alpha              ][  0.500960]
. (    1 sec) [    -13782.5689] [ 1759] [depth=    5]
. (    2 sec) [    -13745.2157] [ 1756] [depth=    4]
. (    3 sec) [    -13744.7190] [ 1754] [depth=    1]
. (    4 sec) [    -13741.0231] [ 1756] [depth=    1]
. (    4 sec) [    -13733.2729] [ 1754] [depth=    1]
. (    5 sec) [    -13730.4233] [ 1752] [depth=    4]
. (    6 sec) [    -13726.9022] [ 1748] [depth=    1]
. (    6 sec) [    -13726.5428] [ 1753] [depth=    1]
. (    7 sec) [    -13708.5927] [Branch lengths     ]
. (    7 sec) [    -13708.5762] [Alpha              ][  0.507004]
. (   10 sec) [    -13706.5408] [ 1748] [depth=    1]
. (   13 sec) [    -13705.4274] [Branch lengths     ]
. (   14 sec) [    -13705.4151] [Alpha              ][  0.512251]
. (   20 sec) [    -13705.3813] [Branch lengths     ]
. (   20 sec) [    -13705.3813] [Topology           ]
. (   22 sec) [    -13705.3791] [Topology           ]
. (   23 sec) [    -13705.3785] [Topology           ]
. (   23 sec) [    -13705.3785] [Alpha              ][  0.512251]
. (   23 sec) [    -13705.3785] [Topology           ]
. (   25 sec) [    -13705.3782] [Topology           ]
. (   25 sec) [    -13705.3782] [Alpha              ][  0.512251]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -13705.378238.

. Printing the most likely tree in file 'proteic_M1383_11x1561_2003.phy_phyml_tree.txt'...


. Time used 0h0m44s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
34.55user 0.00system 0:44.66elapsed 77%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps