.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1384_11x391_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 195 patterns found. (out of a total of 391 sites) . 216 sites without polymorphism (55.24%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 5Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -2896.3161] [Alpha ][ 0.545545] . ( 1 sec) [ -2894.0578] [ 343] [depth= 1] . ( 2 sec) [ -2893.9152] [ 343] [depth= 1] . ( 2 sec) [ -2892.6800] [ 342] [depth= 1] . ( 2 sec) [ -2891.2091] [ 342] [depth= 1] . ( 2 sec) [ -2888.7481] [ 340] [depth= 1] . ( 2 sec) [ -2888.3811] [ 340] [depth= 1] . ( 3 sec) [ -2888.2782] [ 340] [depth= 1] . ( 3 sec) [ -2883.4145] [Branch lengths ] . ( 3 sec) [ -2883.3102] [Alpha ][ 0.588414] . ( 4 sec) [ -2883.2662] [ 340] [depth= 1] . ( 5 sec) [ -2882.8179] [Branch lengths ] . ( 5 sec) [ -2882.8102] [Alpha ][ 0.600382] . ( 5 sec) [ -2882.8102] [Topology ] . ( 6 sec) [ -2882.7951] [Topology ] . ( 6 sec) [ -2882.7927] [Topology ] . ( 7 sec) [ -2882.7921] [Topology ] . ( 7 sec) [ -2882.7920] [Alpha ][ 0.601526] . ( 7 sec) [ -2882.7920] [Topology ] . ( 7 sec) [ -2882.7919] [Topology ] . ( 7 sec) [ -2882.7919] [Alpha ][ 0.601526] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2882.791868. . Printing the most likely tree in file 'proteic_M1384_11x391_2003.phy_phyml_tree.txt'... . Time used 0h0m10s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 9.21user 0.00system 0:09.33elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps