.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1392_57x430_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 389 patterns found. (out of a total of 430 sites) . 150 sites without polymorphism (34.88%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 54Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 3 sec) [ -8287.8174] [Alpha ][ 0.500960] . ( 6 sec) [ -8282.0664] [ 1252] [depth= 1] . ( 7 sec) [ -8281.7063] [ 1254] [depth= 1] . ( 9 sec) [ -8276.3109] [ 1251] [depth= 2] . ( 21 sec) [ -8271.1817] [ 1250] [depth= 1] . ( 22 sec) [ -8268.4324] [ 1249] [depth= 1] . ( 23 sec) [ -8258.8412] [ 1248] [depth= 2] . ( 25 sec) [ -8251.3287] [ 1246] [depth= 3] . ( 28 sec) [ -8250.0650] [ 1246] [depth= 1] . ( 30 sec) [ -8248.2307] [ 1245] [depth= 1] . ( 32 sec) [ -8247.7356] [ 1246] [depth= 1] . ( 33 sec) [ -8247.5732] [ 1245] [depth= 2] . ( 34 sec) [ -8247.2438] [ 1245] [depth= 1] . ( 37 sec) [ -8246.5386] [ 1245] [depth= 1] . ( 44 sec) [ -8241.4842] [ 1245] [depth= 3] . ( 48 sec) [ -8241.3307] [ 1246] [depth= 1] . ( 53 sec) [ -8240.3807] [ 1250] [depth= 1] . ( 55 sec) [ -8235.8376] [ 1250] [depth= 2] . ( 62 sec) [ -8228.3048] [ 1248] [depth= 1] . ( 63 sec) [ -8227.7343] [ 1250] [depth= 1] . ( 66 sec) [ -8223.5222] [ 1249] [depth= 5] . ( 70 sec) [ -8218.5197] [ 1249] [depth= 1] . ( 72 sec) [ -8216.8389] [ 1245] [depth= 4] . ( 73 sec) [ -8214.8133] [ 1245] [depth= 1] . ( 74 sec) [ -8214.4310] [ 1245] [depth= 1] . ( 76 sec) [ -8213.7595] [ 1244] [depth= 2] . ( 79 sec) [ -8212.8487] [ 1244] [depth= 1] . ( 81 sec) [ -8212.4066] [ 1243] [depth= 3] . ( 82 sec) [ -8212.3150] [ 1243] [depth= 1] . ( 87 sec) [ -8211.5753] [ 1243] [depth= 1] . ( 89 sec) [ -8208.1629] [ 1242] [depth= 4] . ( 91 sec) [ -8208.0893] [ 1242] [depth= 2] . ( 93 sec) [ -8208.0789] [ 1242] [depth= 1] . ( 94 sec) [ -8207.7598] [ 1242] [depth= 1] . ( 96 sec) [ -8207.7067] [ 1242] [depth= 1] . ( 107 sec) [ -8180.9901] [Branch lengths ] . ( 109 sec) [ -8180.7214] [Alpha ][ 0.530812] . ( 130 sec) [ -8180.5263] [ 1242] [depth= 1] . ( 136 sec) [ -8179.9630] [ 1242] [depth= 2] . ( 137 sec) [ -8178.7805] [ 1242] [depth= 2] . ( 150 sec) [ -8177.8709] [ 1240] [depth= 2] . ( 164 sec) [ -8177.3170] [ 1236] [depth= 1] . ( 167 sec) [ -8177.2979] [ 1236] [depth= 2] . ( 169 sec) [ -8176.7553] [ 1236] [depth= 2] . ( 175 sec) [ -8175.5802] [ 1235] [depth= 2] . ( 185 sec) [ -8175.5373] [ 1235] [depth= 3] . ( 203 sec) [ -8170.9893] [Branch lengths ] . ( 204 sec) [ -8170.8881] [Alpha ][ 0.549634] . ( 294 sec) [ -8169.9820] [Branch lengths ] . ( 295 sec) [ -8169.9820] [Topology ] . ( 305 sec) [ -8169.8335] [Topology ] . ( 313 sec) [ -8169.7648] [Topology ] . ( 322 sec) [ -8169.7221] [Topology ] . ( 332 sec) [ -8169.6947] [Topology ] . ( 342 sec) [ -8169.6767] [Topology ] . ( 352 sec) [ -8169.6649] [Topology ] . ( 354 sec) [ -8169.6231] [Alpha ][ 0.561712] . ( 354 sec) [ -8169.6231] [Topology ] . ( 363 sec) [ -8169.6106] [Topology ] . ( 373 sec) [ -8169.6025] [Topology ] . ( 383 sec) [ -8169.5971] [Topology ] . ( 393 sec) [ -8169.5936] [Topology ] . ( 403 sec) [ -8169.5912] [Topology ] . ( 412 sec) [ -8169.5897] [Topology ] . ( 414 sec) [ -8169.5888] [Alpha ][ 0.563533] . ( 415 sec) [ -8169.5888] [Topology ] . ( 426 sec) [ -8169.5875] [Topology ] . ( 436 sec) [ -8169.5867] [Topology ] . ( 438 sec) [ -8169.5867] [Alpha ][ 0.563533] . ( 438 sec) [ -8169.5867] [Topology ] . ( 448 sec) [ -8169.5861] [Topology ] . ( 450 sec) [ -8169.5861] [Alpha ][ 0.564096] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -8169.586094. . Printing the most likely tree in file 'proteic_M1392_57x430_2003.phy_phyml_tree.txt'... . Time used 0h8m35s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 294.74user 0.00system 8:37.04elapsed 57%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps