.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1487_52x981_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 623 patterns found. (out of a total of 981 sites) . 470 sites without polymorphism (47.91%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 78Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 4 sec) [ -16605.2876] [Alpha ][ 0.500960] . ( 6 sec) [ -16595.4016] [ 2560] [depth= 1] . ( 9 sec) [ -16593.3251] [ 2559] [depth= 1] . ( 12 sec) [ -16591.2562] [ 2558] [depth= 1] . ( 34 sec) [ -16573.4341] [ 2559] [depth= 1] . ( 35 sec) [ -16570.6494] [ 2558] [depth= 1] . ( 43 sec) [ -16564.0307] [ 2556] [depth= 1] . ( 47 sec) [ -16563.1257] [ 2557] [depth= 1] . ( 56 sec) [ -16555.8449] [ 2557] [depth= 1] . ( 57 sec) [ -16552.4124] [ 2557] [depth= 1] . ( 59 sec) [ -16550.0626] [ 2557] [depth= 2] . ( 68 sec) [ -16538.0293] [ 2556] [depth= 2] . ( 72 sec) [ -16537.0012] [ 2552] [depth= 1] . ( 73 sec) [ -16525.2390] [ 2549] [depth= 2] . ( 75 sec) [ -16522.4200] [ 2549] [depth= 2] . ( 77 sec) [ -16519.6986] [ 2550] [depth= 1] . ( 79 sec) [ -16518.9874] [ 2549] [depth= 1] . ( 81 sec) [ -16517.2438] [ 2547] [depth= 2] . ( 82 sec) [ -16501.7168] [ 2548] [depth= 1] . ( 84 sec) [ -16497.5513] [ 2545] [depth= 1] . ( 85 sec) [ -16494.6893] [ 2543] [depth= 1] . ( 87 sec) [ -16493.2241] [ 2550] [depth= 1] . ( 89 sec) [ -16490.7298] [ 2551] [depth= 1] . ( 92 sec) [ -16474.7399] [ 2547] [depth= 1] . ( 95 sec) [ -16472.4920] [ 2543] [depth= 1] . ( 96 sec) [ -16460.2518] [ 2543] [depth= 1] . ( 104 sec) [ -16456.8179] [ 2541] [depth= 1] . ( 105 sec) [ -16452.4809] [ 2543] [depth= 1] . ( 108 sec) [ -16448.8304] [ 2541] [depth= 2] . ( 112 sec) [ -16448.1908] [ 2541] [depth= 1] . ( 114 sec) [ -16447.2221] [ 2541] [depth= 1] . ( 115 sec) [ -16438.6996] [ 2542] [depth= 2] . ( 117 sec) [ -16438.5946] [ 2541] [depth= 3] . ( 118 sec) [ -16434.5445] [ 2539] [depth= 2] . ( 121 sec) [ -16434.1915] [ 2539] [depth= 1] . ( 127 sec) [ -16431.9197] [ 2539] [depth= 1] . ( 133 sec) [ -16332.1015] [Branch lengths ] . ( 135 sec) [ -16311.2537] [Alpha ][ 0.363807] . ( 171 sec) [ -16304.4574] [ 2538] [depth= 1] . ( 174 sec) [ -16303.7269] [ 2538] [depth= 1] . ( 200 sec) [ -16300.8546] [ 2540] [depth= 1] . ( 250 sec) [ -16292.2996] [Branch lengths ] . ( 253 sec) [ -16292.2122] [Alpha ][ 0.370878] . ( 370 sec) [ -16291.2822] [Branch lengths ] . ( 371 sec) [ -16291.2822] [Topology ] . ( 385 sec) [ -16290.7805] [Topology ] . ( 397 sec) [ -16290.6067] [Topology ] . ( 411 sec) [ -16290.5650] [Topology ] . ( 425 sec) [ -16290.5474] [Topology ] . ( 438 sec) [ -16290.5389] [Topology ] . ( 452 sec) [ -16290.5345] [Topology ] . ( 466 sec) [ -16290.5320] [Topology ] . ( 468 sec) [ -16290.4542] [Alpha ][ 0.377983] . ( 469 sec) [ -16290.4542] [Topology ] . ( 483 sec) [ -16290.4416] [Topology ] . ( 496 sec) [ -16290.4347] [Topology ] . ( 509 sec) [ -16290.4307] [Topology ] . ( 523 sec) [ -16290.4282] [Topology ] . ( 538 sec) [ -16290.4268] [Topology ] . ( 554 sec) [ -16290.4259] [Topology ] . ( 557 sec) [ -16290.4237] [Alpha ][ 0.379128] . ( 558 sec) [ -16290.4237] [Topology ] . ( 573 sec) [ -16290.4225] [Topology ] . ( 589 sec) [ -16290.4218] [Topology ] . ( 592 sec) [ -16290.4217] [Alpha ][ 0.379508] . ( 593 sec) [ -16290.4217] [Topology ] . ( 608 sec) [ -16290.4212] [Topology ] . ( 611 sec) [ -16290.4212] [Alpha ][ 0.379508] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -16290.421155. . Printing the most likely tree in file 'proteic_M1487_52x981_2003.phy_phyml_tree.txt'... . Time used 0h12m8s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 418.17user 0.00system 12:09.88elapsed 57%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps