..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1499_22x513_2003.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 440 patterns found. (out of a total of 513 sites) 

. 87 sites without polymorphism (16.96%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 22Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    1 sec) [    -12557.6395] [Alpha              ][  0.856477]
. (    4 sec) [    -12555.7312] [ 2338] [depth=    1]
. (    5 sec) [    -12555.3621] [ 2338] [depth=    1]
. (    6 sec) [    -12552.4390] [ 2338] [depth=    1]
. (    6 sec) [    -12543.7453] [ 2338] [depth=    1]
. (    6 sec) [    -12536.4678] [ 2338] [depth=    1]
. (    7 sec) [    -12533.0242] [ 2339] [depth=    1]
. (    8 sec) [    -12530.6027] [ 2340] [depth=    1]
. (    8 sec) [    -12525.0215] [ 2339] [depth=    1]
. (   11 sec) [    -12521.8599] [ 2335] [depth=    1]
. (   12 sec) [    -12518.9567] [ 2339] [depth=    1]
. (   14 sec) [    -12480.8743] [Branch lengths     ]
. (   14 sec) [    -12479.1254] [Alpha              ][  0.978259]
. (   27 sec) [    -12474.9324] [Branch lengths     ]
. (   27 sec) [    -12474.9324] [Topology           ]
. (   29 sec) [    -12472.8617] [Topology           ]
. (   31 sec) [    -12471.9168] [Topology           ]
. (   33 sec) [    -12471.7845] [Topology           ]
. (   34 sec) [    -12471.7370] [Topology           ]
. (   36 sec) [    -12471.7143] [Topology           ]
. (   38 sec) [    -12471.7022] [Topology           ]
. (   40 sec) [    -12471.6955] [Topology           ]
. (   40 sec) [    -12471.6485] [Alpha              ][  0.999322]
. (   40 sec) [    -12471.6485] [Topology           ]
. (   42 sec) [    -12471.6440] [Topology           ]
. (   44 sec) [    -12471.6415] [Topology           ]
. (   46 sec) [    -12471.6402] [Topology           ]
. (   48 sec) [    -12471.6394] [Topology           ]
. (   48 sec) [    -12471.6393] [Alpha              ][  1.000321]
. (   48 sec) [    -12471.6393] [Topology           ]
. (   50 sec) [    -12471.6389] [Topology           ]
. (   51 sec) [    -12471.6389] [Alpha              ][  1.000321]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -12471.638850.

. Printing the most likely tree in file 'proteic_M1499_22x513_2003.phy_phyml_tree.txt'...


. Time used 0h1m6s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
64.49user 0.00system 1:06.47elapsed 97%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps