..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1503_23x479_2003.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 356 patterns found. (out of a total of 479 sites) 

. 140 sites without polymorphism (29.23%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 19Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    1 sec) [     -9920.9916] [Alpha              ][  0.500960]
. (    2 sec) [     -9920.4868] [ 1746] [depth=    1]
. (    3 sec) [     -9918.9749] [ 1748] [depth=    1]
. (    3 sec) [     -9917.2232] [ 1746] [depth=    1]
. (    5 sec) [     -9911.3386] [ 1747] [depth=    1]
. (    6 sec) [     -9904.7010] [ 1748] [depth=    2]
. (    7 sec) [     -9899.8753] [ 1745] [depth=    1]
. (    7 sec) [     -9898.4512] [ 1745] [depth=    1]
. (    7 sec) [     -9896.8620] [ 1745] [depth=    1]
. (    8 sec) [     -9894.3262] [ 1744] [depth=    1]
. (    9 sec) [     -9893.5981] [ 1746] [depth=    1]
. (   10 sec) [     -9885.9702] [ 1744] [depth=    2]
. (   12 sec) [     -9858.5233] [Branch lengths     ]
. (   12 sec) [     -9857.5197] [Alpha              ][  0.553194]
. (   18 sec) [     -9856.8790] [ 1744] [depth=    2]
. (   21 sec) [     -9856.3595] [ 1745] [depth=    1]
. (   23 sec) [     -9853.5108] [Branch lengths     ]
. (   23 sec) [     -9853.4093] [Alpha              ][  0.570744]
. (   34 sec) [     -9853.1731] [Branch lengths     ]
. (   34 sec) [     -9853.1731] [Topology           ]
. (   36 sec) [     -9851.4507] [Topology           ]
. (   37 sec) [     -9851.1023] [Topology           ]
. (   39 sec) [     -9851.0844] [Topology           ]
. (   41 sec) [     -9851.0818] [Topology           ]
. (   42 sec) [     -9851.0812] [Topology           ]
. (   43 sec) [     -9851.0426] [Alpha              ][  0.582155]
. (   43 sec) [     -9851.0426] [Topology           ]
. (   45 sec) [     -9851.0363] [Topology           ]
. (   47 sec) [     -9851.0340] [Topology           ]
. (   48 sec) [     -9851.0330] [Topology           ]
. (   49 sec) [     -9851.0323] [Alpha              ][  0.583748]
. (   49 sec) [     -9851.0323] [Topology           ]
. (   51 sec) [     -9851.0314] [Topology           ]
. (   51 sec) [     -9851.0314] [Alpha              ][  0.584332]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -9851.031379.

. Printing the most likely tree in file 'proteic_M1503_23x479_2003.phy_phyml_tree.txt'...


. Time used 0h1m4s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
63.17user 0.00system 1:03.92elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps