.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1508_22x431_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 172 patterns found. (out of a total of 431 sites) . 298 sites without polymorphism (69.14%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 9Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -3189.9244] [Alpha ][ 0.500960] . ( 2 sec) [ -3187.2806] [ 315] [depth= 1] . ( 3 sec) [ -3187.0346] [ 315] [depth= 1] . ( 3 sec) [ -3184.4831] [ 315] [depth= 1] . ( 3 sec) [ -3184.4559] [ 315] [depth= 1] . ( 3 sec) [ -3183.4226] [ 313] [depth= 1] . ( 3 sec) [ -3182.2805] [ 314] [depth= 1] . ( 4 sec) [ -3182.1152] [ 314] [depth= 1] . ( 4 sec) [ -3177.6229] [ 314] [depth= 1] . ( 5 sec) [ -3172.4483] [ 314] [depth= 1] . ( 6 sec) [ -3165.1925] [Branch lengths ] . ( 7 sec) [ -3155.8471] [Alpha ][ 0.271203] . ( 10 sec) [ -3155.8312] [ 314] [depth= 1] . ( 12 sec) [ -3155.1755] [Branch lengths ] . ( 13 sec) [ -3155.1743] [Alpha ][ 0.272986] . ( 13 sec) [ -3155.1743] [Topology ] . ( 14 sec) [ -3155.1015] [Topology ] . ( 15 sec) [ -3155.0940] [Topology ] . ( 15 sec) [ -3155.0924] [Topology ] . ( 16 sec) [ -3155.0918] [Topology ] . ( 17 sec) [ -3155.0916] [Alpha ][ 0.273659] . ( 17 sec) [ -3155.0916] [Topology ] . ( 18 sec) [ -3155.0914] [Topology ] . ( 18 sec) [ -3155.0914] [Alpha ][ 0.273659] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -3155.091393. . Printing the most likely tree in file 'proteic_M1508_22x431_2003.phy_phyml_tree.txt'... . Time used 0h0m24s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 23.94user 0.00system 0:24.20elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps