.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1601_36x340_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 322 patterns found. (out of a total of 340 sites) . 79 sites without polymorphism (23.24%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 28Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -7041.5767] [Alpha ][ 1.039970] . ( 2 sec) [ -7038.2736] [ 1168] [depth= 1] . ( 4 sec) [ -7035.4961] [ 1167] [depth= 1] . ( 6 sec) [ -7027.3983] [ 1166] [depth= 1] . ( 7 sec) [ -7026.8394] [ 1166] [depth= 1] . ( 7 sec) [ -7025.3289] [ 1166] [depth= 1] . ( 7 sec) [ -7025.2115] [ 1166] [depth= 1] . ( 8 sec) [ -7024.0600] [ 1161] [depth= 4] . ( 9 sec) [ -7022.4309] [ 1161] [depth= 1] . ( 9 sec) [ -7005.0207] [ 1161] [depth= 4] . ( 10 sec) [ -7002.7486] [ 1161] [depth= 2] . ( 11 sec) [ -6999.0269] [ 1161] [depth= 1] . ( 15 sec) [ -6997.4023] [ 1161] [depth= 1] . ( 16 sec) [ -6993.5490] [ 1160] [depth= 1] . ( 16 sec) [ -6988.7441] [ 1159] [depth= 3] . ( 18 sec) [ -6983.1059] [ 1157] [depth= 1] . ( 18 sec) [ -6981.8755] [ 1156] [depth= 1] . ( 19 sec) [ -6981.8344] [ 1156] [depth= 1] . ( 20 sec) [ -6975.9506] [ 1153] [depth= 1] . ( 22 sec) [ -6972.4732] [ 1152] [depth= 1] . ( 23 sec) [ -6969.7620] [ 1151] [depth= 1] . ( 23 sec) [ -6969.6904] [ 1151] [depth= 1] . ( 27 sec) [ -6922.7115] [Branch lengths ] . ( 27 sec) [ -6922.4991] [Alpha ][ 1.113540] . ( 48 sec) [ -6917.5014] [Branch lengths ] . ( 49 sec) [ -6917.5014] [Topology ] . ( 52 sec) [ -6916.9358] [Topology ] . ( 55 sec) [ -6916.7055] [Topology ] . ( 59 sec) [ -6916.5847] [Topology ] . ( 62 sec) [ -6916.5190] [Topology ] . ( 65 sec) [ -6916.4827] [Topology ] . ( 69 sec) [ -6916.4623] [Topology ] . ( 69 sec) [ -6916.4550] [Alpha ][ 1.099578] . ( 69 sec) [ -6916.4550] [Topology ] . ( 73 sec) [ -6916.4413] [Topology ] . ( 76 sec) [ -6916.4337] [Topology ] . ( 79 sec) [ -6916.4293] [Topology ] . ( 83 sec) [ -6916.4268] [Topology ] . ( 86 sec) [ -6916.4253] [Topology ] . ( 90 sec) [ -6916.4245] [Topology ] . ( 90 sec) [ -6916.4240] [Alpha ][ 1.096131] . ( 90 sec) [ -6916.4240] [Topology ] . ( 96 sec) [ -6916.4234] [Topology ] . ( 97 sec) [ -6916.4234] [Alpha ][ 1.096131] . Checking for NNIs, optimizing five branches... . ( 140 sec) [ -6916.3807] [Topology ] . Checking for NNIs, optimizing five branches... . ( 184 sec) [ -6916.2020] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -6916.202003. . Printing the most likely tree in file 'proteic_M1601_36x340_2003.phy_phyml_tree.txt'... . Time used 0h3m48s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 156.00user 0.00system 3:48.93elapsed 68%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps