..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1812_34x176_2004.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 173 patterns found. (out of a total of 176 sites) 

. 16 sites without polymorphism (9.09%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 14Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    0 sec) [     -5450.8068] [Alpha              ][  1.505579]
. (    4 sec) [     -5450.2724] [ 1008] [depth=    1]
. (    6 sec) [     -5450.0815] [ 1009] [depth=    2]
. (    6 sec) [     -5449.7371] [ 1009] [depth=    1]
. (    7 sec) [     -5449.5669] [ 1009] [depth=    1]
. (    9 sec) [     -5448.5562] [ 1009] [depth=    1]
. (   10 sec) [     -5446.2167] [ 1007] [depth=    1]
. (   11 sec) [     -5426.5085] [Branch lengths     ]
. (   11 sec) [     -5426.4623] [Alpha              ][  1.564861]
. (   16 sec) [     -5423.4015] [ 1009] [depth=    1]
. (   17 sec) [     -5423.2567] [ 1008] [depth=    1]
. (   22 sec) [     -5420.7968] [Branch lengths     ]
. (   22 sec) [     -5420.7754] [Alpha              ][  1.605295]
. (   33 sec) [     -5420.5548] [Branch lengths     ]
. (   33 sec) [     -5420.5548] [Topology           ]
. (   34 sec) [     -5420.5373] [Topology           ]
. (   36 sec) [     -5420.5327] [Topology           ]
. (   37 sec) [     -5420.5308] [Topology           ]
. (   39 sec) [     -5420.5299] [Topology           ]
. (   39 sec) [     -5420.5289] [Alpha              ][  1.614362]
. (   39 sec) [     -5420.5289] [Topology           ]
. (   42 sec) [     -5420.5284] [Topology           ]
. (   42 sec) [     -5420.5284] [Alpha              ][  1.614362]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -5420.528360.

. Printing the most likely tree in file 'proteic_M1812_34x176_2004.phy_phyml_tree.txt'...


. Time used 0h1m3s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
51.08user 0.00system 1:03.93elapsed 79%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps