.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1882_8x705_2004.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 524 patterns found. (out of a total of 705 sites) . 233 sites without polymorphism (33.05%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 8Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -6233.3784] [Alpha ][ 1.337069] . ( 1 sec) [ -6208.8621] [ 932] [depth= 1] . ( 3 sec) [ -6196.5115] [Branch lengths ] . ( 3 sec) [ -6193.8057] [Alpha ][ 1.037481] . ( 6 sec) [ -6192.4787] [Branch lengths ] . ( 6 sec) [ -6192.4787] [Topology ] . ( 7 sec) [ -6192.4341] [Topology ] . ( 7 sec) [ -6192.4267] [Topology ] . ( 8 sec) [ -6192.4246] [Topology ] . ( 9 sec) [ -6192.4239] [Topology ] . ( 9 sec) [ -6192.1247] [Alpha ][ 0.960616] . ( 9 sec) [ -6192.1247] [Topology ] . ( 10 sec) [ -6192.0512] [Topology ] . ( 11 sec) [ -6192.0337] [Topology ] . ( 12 sec) [ -6192.0289] [Topology ] . ( 12 sec) [ -6192.0275] [Topology ] . ( 13 sec) [ -6192.0272] [Topology ] . ( 13 sec) [ -6192.0007] [Alpha ][ 0.939512] . ( 13 sec) [ -6192.0007] [Topology ] . ( 14 sec) [ -6191.9931] [Topology ] . ( 15 sec) [ -6191.9912] [Topology ] . ( 16 sec) [ -6191.9906] [Topology ] . ( 16 sec) [ -6191.9882] [Alpha ][ 0.932838] . ( 16 sec) [ -6191.9882] [Topology ] . ( 17 sec) [ -6191.9868] [Topology ] . ( 18 sec) [ -6191.9864] [Topology ] . ( 18 sec) [ -6191.9862] [Alpha ][ 0.930777] . ( 18 sec) [ -6191.9862] [Topology ] . ( 19 sec) [ -6191.9858] [Topology ] . ( 19 sec) [ -6191.9858] [Alpha ][ 0.929847] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -6191.985834. . Printing the most likely tree in file 'proteic_M1882_8x705_2004.phy_phyml_tree.txt'... . Time used 0h0m27s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 26.12user 0.00system 0:27.20elapsed 96%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps