.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1992_46x68_2004.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 68 patterns found. (out of a total of 68 sites) . 1 sites without polymorphism (1.47%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 9Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -3015.2739] [Alpha ][ 1.996970] . ( 1 sec) [ -3009.8145] [ 596] [depth= 1] . ( 1 sec) [ -3008.6553] [ 596] [depth= 1] . ( 1 sec) [ -3008.0825] [ 596] [depth= 1] . ( 2 sec) [ -3007.9894] [ 596] [depth= 1] . ( 2 sec) [ -3007.8324] [ 596] [depth= 1] . ( 2 sec) [ -2984.1112] [ 596] [depth= 4] . ( 3 sec) [ -2970.8096] [ 596] [depth= 3] . ( 3 sec) [ -2969.9180] [ 594] [depth= 3] . ( 3 sec) [ -2968.9224] [ 593] [depth= 4] . ( 3 sec) [ -2968.5292] [ 594] [depth= 2] . ( 3 sec) [ -2960.2240] [ 594] [depth= 1] . ( 4 sec) [ -2958.3572] [ 594] [depth= 1] . ( 4 sec) [ -2957.6444] [ 594] [depth= 1] . ( 5 sec) [ -2957.2566] [ 594] [depth= 1] . ( 5 sec) [ -2957.1544] [ 594] [depth= 1] . ( 5 sec) [ -2957.1224] [ 594] [depth= 1] . ( 6 sec) [ -2956.4870] [ 594] [depth= 1] . ( 7 sec) [ -2955.6173] [ 595] [depth= 2] . ( 8 sec) [ -2955.4281] [ 596] [depth= 3] . ( 8 sec) [ -2954.0882] [ 596] [depth= 1] . ( 8 sec) [ -2951.6467] [ 596] [depth= 1] . ( 9 sec) [ -2950.8414] [ 594] [depth= 3] . ( 9 sec) [ -2950.5702] [ 592] [depth= 2] . ( 9 sec) [ -2950.3555] [ 592] [depth= 1] . ( 9 sec) [ -2950.1361] [ 591] [depth= 1] . ( 10 sec) [ -2949.9897] [ 591] [depth= 1] . ( 10 sec) [ -2949.3538] [ 591] [depth= 1] . ( 11 sec) [ -2948.9033] [ 590] [depth= 2] . ( 11 sec) [ -2946.5497] [ 589] [depth= 1] . ( 11 sec) [ -2944.3464] [ 590] [depth= 1] . ( 12 sec) [ -2944.3240] [ 590] [depth= 1] . ( 12 sec) [ -2932.5418] [Branch lengths ] . ( 13 sec) [ -2928.9160] [Alpha ][ 3.841729] . ( 14 sec) [ -2928.2433] [ 590] [depth= 1] . ( 14 sec) [ -2928.2087] [ 590] [depth= 10] . ( 15 sec) [ -2927.3554] [ 589] [depth= 2] . ( 16 sec) [ -2927.3231] [ 589] [depth= 1] . ( 22 sec) [ -2924.5528] [Branch lengths ] . ( 22 sec) [ -2924.5017] [Alpha ][ 4.179706] . ( 33 sec) [ -2924.3535] [Branch lengths ] . ( 33 sec) [ -2924.3535] [Topology ] . ( 35 sec) [ -2924.3489] [Topology ] . ( 37 sec) [ -2924.3483] [Topology ] . ( 37 sec) [ -2924.3480] [Alpha ][ 4.205635] . ( 37 sec) [ -2924.3480] [Topology ] . ( 39 sec) [ -2924.3478] [Topology ] . ( 40 sec) [ -2924.3478] [Alpha ][ 4.205635] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2924.347831. . Printing the most likely tree in file 'proteic_M1992_46x68_2004.phy_phyml_tree.txt'... . Time used 0h0m53s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 38.76user 0.00system 0:53.78elapsed 72%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps