.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1993_28x93_2004.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 79 patterns found. (out of a total of 93 sites) . 26 sites without polymorphism (27.96%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 6Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -2041.7950] [Alpha ][ 0.666358] . ( 1 sec) [ -2040.6879] [ 341] [depth= 1] . ( 1 sec) [ -2038.7596] [ 342] [depth= 1] . ( 2 sec) [ -2038.5780] [ 341] [depth= 1] . ( 3 sec) [ -2038.5557] [ 341] [depth= 1] . ( 3 sec) [ -2038.4770] [ 341] [depth= 1] . ( 3 sec) [ -2031.6873] [ 339] [depth= 3] . ( 3 sec) [ -2027.8895] [ 339] [depth= 3] . ( 3 sec) [ -2026.8367] [ 339] [depth= 1] . ( 4 sec) [ -2023.8136] [ 340] [depth= 1] . ( 4 sec) [ -2021.8963] [ 339] [depth= 2] . ( 5 sec) [ -2019.5736] [ 341] [depth= 1] . ( 5 sec) [ -2017.2409] [ 341] [depth= 2] . ( 6 sec) [ -2016.7043] [ 341] [depth= 1] . ( 6 sec) [ -2016.6394] [ 341] [depth= 1] . ( 6 sec) [ -2016.6290] [ 341] [depth= 1] . ( 6 sec) [ -2016.3889] [ 342] [depth= 1] . ( 6 sec) [ -2010.4126] [Branch lengths ] . ( 7 sec) [ -2010.3819] [Alpha ][ 0.694981] . ( 8 sec) [ -2010.2523] [ 342] [depth= 1] . ( 10 sec) [ -2009.8814] [ 340] [depth= 1] . ( 10 sec) [ -2009.8438] [ 339] [depth= 1] . ( 11 sec) [ -2008.1799] [Branch lengths ] . ( 12 sec) [ -2008.1794] [Alpha ][ 0.698767] . ( 14 sec) [ -2008.0408] [ 340] [depth= 1] . ( 15 sec) [ -2007.9518] [ 340] [depth= 6] . ( 16 sec) [ -2007.9075] [ 342] [depth= 2] . ( 16 sec) [ -2007.7471] [ 341] [depth= 1] . ( 17 sec) [ -2007.7328] [ 340] [depth= 2] . ( 17 sec) [ -2007.4250] [Branch lengths ] . ( 17 sec) [ -2007.4245] [Alpha ][ 0.702379] . ( 17 sec) [ -2007.4245] [Topology ] . ( 18 sec) [ -2007.3001] [Topology ] . ( 18 sec) [ -2007.1995] [Topology ] . ( 19 sec) [ -2007.1854] [Topology ] . ( 20 sec) [ -2007.1813] [Topology ] . ( 20 sec) [ -2007.1796] [Topology ] . ( 21 sec) [ -2007.1787] [Topology ] . ( 21 sec) [ -2007.1781] [Alpha ][ 0.706685] . ( 21 sec) [ -2007.1781] [Topology ] . ( 22 sec) [ -2007.1775] [Topology ] . ( 22 sec) [ -2007.1775] [Alpha ][ 0.706685] . Checking for NNIs, optimizing five branches... . ( 26 sec) [ -2006.7989] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -2006.798946. . Printing the most likely tree in file 'proteic_M1993_28x93_2004.phy_phyml_tree.txt'... . Time used 0h0m30s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 29.22user 0.00system 0:31.50elapsed 92%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps