.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2363_38x251_2004.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 244 patterns found. (out of a total of 251 sites) . 24 sites without polymorphism (9.56%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 23Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -12114.3207] [Alpha ][ 1.997534] . ( 2 sec) [ -12110.8932] [ 2680] [depth= 1] . ( 2 sec) [ -12110.4070] [ 2682] [depth= 1] . ( 2 sec) [ -12110.2346] [ 2680] [depth= 1] . ( 2 sec) [ -12100.5882] [ 2676] [depth= 1] . ( 3 sec) [ -12099.5999] [ 2677] [depth= 1] . ( 4 sec) [ -12079.8486] [ 2676] [depth= 1] . ( 5 sec) [ -12038.1293] [ 2675] [depth= 1] . ( 6 sec) [ -12034.8509] [ 2674] [depth= 1] . ( 11 sec) [ -12034.3805] [ 2676] [depth= 1] . ( 11 sec) [ -12031.0845] [ 2677] [depth= 1] . ( 13 sec) [ -12027.5975] [ 2676] [depth= 1] . ( 14 sec) [ -12024.3525] [ 2676] [depth= 3] . ( 14 sec) [ -12014.8978] [ 2678] [depth= 1] . ( 15 sec) [ -11995.2542] [ 2676] [depth= 1] . ( 15 sec) [ -11989.9899] [ 2671] [depth= 2] . ( 16 sec) [ -11989.9064] [ 2675] [depth= 1] . ( 16 sec) [ -11965.0597] [ 2675] [depth= 2] . ( 17 sec) [ -11916.0381] [ 2678] [depth= 2] . ( 17 sec) [ -11915.6964] [ 2679] [depth= 1] . ( 18 sec) [ -11910.8592] [ 2683] [depth= 6] . ( 18 sec) [ -11909.5427] [ 2682] [depth= 1] . ( 18 sec) [ -11899.6798] [ 2678] [depth= 6] . ( 19 sec) [ -11888.3182] [ 2678] [depth= 2] . ( 19 sec) [ -11884.8730] [ 2677] [depth= 6] . ( 20 sec) [ -11876.9037] [ 2674] [depth= 5] . ( 20 sec) [ -11870.4067] [ 2673] [depth= 1] . ( 20 sec) [ -11857.0529] [ 2673] [depth= 1] . ( 21 sec) [ -11854.7399] [ 2670] [depth= 2] . ( 21 sec) [ -11842.3204] [ 2667] [depth= 2] . ( 22 sec) [ -11839.2804] [ 2667] [depth= 1] . ( 23 sec) [ -11832.5060] [ 2667] [depth= 3] . ( 23 sec) [ -11824.4377] [ 2663] [depth= 4] . ( 24 sec) [ -11757.1709] [Branch lengths ] . ( 25 sec) [ -11735.2472] [Alpha ][ 3.989236] . ( 26 sec) [ -11734.9094] [ 2669] [depth= 1] . ( 28 sec) [ -11734.6357] [ 2668] [depth= 1] . ( 32 sec) [ -11734.3769] [ 2669] [depth= 1] . ( 33 sec) [ -11733.6386] [ 2667] [depth= 1] . ( 34 sec) [ -11731.3657] [ 2667] [depth= 4] . ( 36 sec) [ -11730.9950] [ 2663] [depth= 1] . ( 37 sec) [ -11730.9675] [ 2665] [depth= 1] . ( 38 sec) [ -11730.6626] [ 2665] [depth= 1] . ( 39 sec) [ -11730.6088] [ 2668] [depth= 1] . ( 40 sec) [ -11730.2275] [ 2669] [depth= 1] . ( 40 sec) [ -11728.5298] [ 2665] [depth= 1] . ( 42 sec) [ -11728.4926] [ 2667] [depth= 4] . ( 44 sec) [ -11722.7486] [Branch lengths ] . ( 44 sec) [ -11719.9245] [Alpha ][ 5.836268] . ( 46 sec) [ -11719.4263] [ 2662] [depth= 1] . ( 56 sec) [ -11718.2028] [ 2664] [depth= 2] . ( 58 sec) [ -11717.6523] [ 2666] [depth= 1] . ( 60 sec) [ -11716.2853] [ 2665] [depth= 3] . ( 61 sec) [ -11714.5256] [Branch lengths ] . ( 62 sec) [ -11714.4364] [Alpha ][ 6.270982] . ( 78 sec) [ -11714.3755] [ 2664] [depth= 3] . ( 80 sec) [ -11712.7184] [Branch lengths ] . ( 80 sec) [ -11712.7017] [Alpha ][ 6.476179] . ( 83 sec) [ -11712.2421] [ 2661] [depth= 1] . ( 99 sec) [ -11711.8053] [Branch lengths ] . ( 100 sec) [ -11711.8050] [Alpha ][ 6.443757] . ( 100 sec) [ -11711.8050] [Topology ] . ( 102 sec) [ -11711.7344] [Topology ] . ( 105 sec) [ -11711.6993] [Topology ] . ( 107 sec) [ -11711.6760] [Topology ] . ( 109 sec) [ -11711.6585] [Topology ] . ( 112 sec) [ -11711.6444] [Topology ] . ( 114 sec) [ -11711.6329] [Topology ] . ( 114 sec) [ -11711.6329] [Alpha ][ 6.450201] . ( 115 sec) [ -11711.6329] [Topology ] . ( 117 sec) [ -11711.6234] [Topology ] . ( 119 sec) [ -11711.6155] [Topology ] . ( 123 sec) [ -11711.6090] [Topology ] . ( 127 sec) [ -11711.6036] [Topology ] . ( 132 sec) [ -11711.5991] [Topology ] . ( 137 sec) [ -11711.5953] [Topology ] . ( 137 sec) [ -11711.5953] [Alpha ][ 6.456651] . ( 138 sec) [ -11711.5953] [Topology ] . ( 142 sec) [ -11711.5924] [Topology ] . ( 147 sec) [ -11711.5906] [Topology ] . ( 152 sec) [ -11711.5896] [Topology ] . ( 156 sec) [ -11711.5888] [Topology ] . ( 157 sec) [ -11711.5888] [Alpha ][ 6.463108] . ( 157 sec) [ -11711.5888] [Topology ] . ( 162 sec) [ -11711.5882] [Topology ] . ( 163 sec) [ -11711.5882] [Alpha ][ 6.463108] . Checking for NNIs, optimizing five branches... . ( 218 sec) [ -11711.4489] [Topology ] . Checking for NNIs, optimizing five branches... . ( 267 sec) [ -11711.2902] [Topology ] . Checking for NNIs, optimizing five branches... . ( 312 sec) [ -11711.2601] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -11711.260077. . Printing the most likely tree in file 'proteic_M2363_38x251_2004.phy_phyml_tree.txt'... . Time used 0h5m59s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 247.68user 0.00system 5:59.99elapsed 68%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps