.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2476_30x719_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 620 patterns found. (out of a total of 719 sites) . 115 sites without polymorphism (15.99%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 44Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -24774.5534] [Alpha ][ 0.568788] . ( 3 sec) [ -24770.6356] [ 4912] [depth= 2] . ( 4 sec) [ -24754.7924] [ 4911] [depth= 1] . ( 5 sec) [ -24750.8991] [ 4912] [depth= 1] . ( 8 sec) [ -24750.3251] [ 4917] [depth= 1] . ( 9 sec) [ -24746.3950] [ 4915] [depth= 3] . ( 11 sec) [ -24742.8796] [ 4932] [depth= 1] . ( 12 sec) [ -24733.5444] [ 4915] [depth= 1] . ( 12 sec) [ -24728.5445] [ 4915] [depth= 2] . ( 13 sec) [ -24725.6482] [ 4911] [depth= 1] . ( 15 sec) [ -24724.4329] [ 4915] [depth= 2] . ( 16 sec) [ -24716.3329] [ 4908] [depth= 2] . ( 16 sec) [ -24709.7808] [ 4910] [depth= 1] . ( 17 sec) [ -24703.1281] [ 4914] [depth= 1] . ( 17 sec) [ -24691.4376] [ 4918] [depth= 1] . ( 19 sec) [ -24682.3274] [ 4919] [depth= 1] . ( 19 sec) [ -24678.0687] [ 4918] [depth= 1] . ( 21 sec) [ -24666.9856] [ 4912] [depth= 5] . ( 26 sec) [ -24663.3536] [ 4910] [depth= 1] . ( 27 sec) [ -24659.7687] [ 4912] [depth= 1] . ( 28 sec) [ -24657.1930] [ 4916] [depth= 1] . ( 29 sec) [ -24647.1453] [ 4914] [depth= 1] . ( 32 sec) [ -24586.7991] [Branch lengths ] . ( 32 sec) [ -24580.6189] [Alpha ][ 0.670423] . ( 37 sec) [ -24572.2559] [ 4908] [depth= 1] . ( 49 sec) [ -24569.8580] [ 4905] [depth= 1] . ( 57 sec) [ -24554.3240] [Branch lengths ] . ( 58 sec) [ -24553.9100] [Alpha ][ 0.699607] . ( 82 sec) [ -24550.5771] [Branch lengths ] . ( 82 sec) [ -24550.5771] [Topology ] . ( 86 sec) [ -24545.2907] [Topology ] . ( 89 sec) [ -24543.9492] [Topology ] . ( 93 sec) [ -24543.1480] [Topology ] . ( 97 sec) [ -24542.9095] [Topology ] . ( 100 sec) [ -24542.7812] [Topology ] . ( 104 sec) [ -24542.7007] [Topology ] . ( 107 sec) [ -24542.5688] [Topology ] . ( 111 sec) [ -24541.2691] [Topology ] . ( 115 sec) [ -24541.0932] [Topology ] . ( 119 sec) [ -24540.9753] [Alpha ][ 0.710683] . ( 119 sec) [ -24540.9753] [Topology ] . ( 123 sec) [ -24540.9386] [Topology ] . ( 128 sec) [ -24540.9179] [Topology ] . ( 134 sec) [ -24540.9049] [Topology ] . ( 141 sec) [ -24540.8964] [Topology ] . ( 148 sec) [ -24540.8909] [Topology ] . ( 154 sec) [ -24540.8872] [Topology ] . ( 155 sec) [ -24540.8869] [Alpha ][ 0.711484] . ( 156 sec) [ -24540.8869] [Topology ] . ( 162 sec) [ -24540.8843] [Topology ] . ( 168 sec) [ -24540.8827] [Topology ] . ( 174 sec) [ -24540.8816] [Topology ] . ( 181 sec) [ -24540.8809] [Topology ] . ( 182 sec) [ -24540.8809] [Alpha ][ 0.711484] . ( 182 sec) [ -24540.8809] [Topology ] . ( 188 sec) [ -24540.8804] [Topology ] . ( 189 sec) [ -24540.8804] [Alpha ][ 0.711484] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -24540.880368. . Printing the most likely tree in file 'proteic_M2476_30x719_2005.phy_phyml_tree.txt'... . Time used 0h4m5s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 193.26user 0.00system 4:06.13elapsed 78%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps