.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2477_39x888_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 638 patterns found. (out of a total of 888 sites) . 262 sites without polymorphism (29.50%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 59Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 2 sec) [ -21417.6215] [Alpha ][ 0.500960] . ( 10 sec) [ -21410.9407] [ 3658] [depth= 1] . ( 11 sec) [ -21408.0982] [ 3660] [depth= 1] . ( 14 sec) [ -21402.3501] [ 3658] [depth= 1] . ( 22 sec) [ -21380.4295] [ 3663] [depth= 2] . ( 23 sec) [ -21379.8315] [ 3659] [depth= 2] . ( 25 sec) [ -21365.7719] [ 3658] [depth= 1] . ( 26 sec) [ -21364.7340] [ 3659] [depth= 1] . ( 30 sec) [ -21355.3289] [ 3658] [depth= 1] . ( 45 sec) [ -21354.4489] [ 3662] [depth= 1] . ( 46 sec) [ -21341.5116] [ 3658] [depth= 1] . ( 53 sec) [ -21339.6246] [ 3662] [depth= 1] . ( 55 sec) [ -21330.7742] [ 3658] [depth= 1] . ( 57 sec) [ -21325.3816] [ 3660] [depth= 1] . ( 59 sec) [ -21324.1660] [ 3658] [depth= 1] . ( 62 sec) [ -21322.8934] [ 3664] [depth= 1] . ( 64 sec) [ -21311.6565] [ 3658] [depth= 1] . ( 65 sec) [ -21309.6998] [ 3659] [depth= 1] . ( 69 sec) [ -21309.6116] [ 3658] [depth= 1] . ( 71 sec) [ -21309.1233] [ 3659] [depth= 1] . ( 74 sec) [ -21190.2551] [Branch lengths ] . ( 76 sec) [ -21190.2335] [Alpha ][ 0.505765] . ( 127 sec) [ -21188.2471] [ 3660] [depth= 1] . ( 141 sec) [ -21167.9769] [Branch lengths ] . ( 142 sec) [ -21167.8642] [Alpha ][ 0.516346] . ( 206 sec) [ -21164.1813] [Branch lengths ] . ( 206 sec) [ -21164.1813] [Topology ] . ( 216 sec) [ -21163.7770] [Topology ] . ( 225 sec) [ -21163.6315] [Topology ] . ( 234 sec) [ -21163.5572] [Topology ] . ( 243 sec) [ -21163.5172] [Topology ] . ( 252 sec) [ -21163.4954] [Topology ] . ( 261 sec) [ -21163.4835] [Topology ] . ( 263 sec) [ -21163.4546] [Alpha ][ 0.521970] . ( 264 sec) [ -21163.4546] [Topology ] . ( 274 sec) [ -21163.4462] [Topology ] . ( 285 sec) [ -21163.4418] [Topology ] . ( 295 sec) [ -21163.4393] [Topology ] . ( 306 sec) [ -21163.4380] [Topology ] . ( 316 sec) [ -21163.4372] [Topology ] . ( 318 sec) [ -21163.4372] [Alpha ][ 0.521970] . ( 319 sec) [ -21163.4372] [Topology ] . ( 329 sec) [ -21163.4368] [Topology ] . ( 331 sec) [ -21163.4368] [Alpha ][ 0.521970] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -21163.436773. . Printing the most likely tree in file 'proteic_M2477_39x888_2005.phy_phyml_tree.txt'... . Time used 0h7m2s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 234.37user 0.00system 7:03.59elapsed 55%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps