..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M2478_30x276_2005.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 249 patterns found. (out of a total of 276 sites) 

. 41 sites without polymorphism (14.86%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 18Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    0 sec) [     -8811.1519] [Alpha              ][  0.880454]
. (    1 sec) [     -8799.7211] [ 1681] [depth=    1]
. (    3 sec) [     -8794.0723] [ 1678] [depth=    1]
. (    4 sec) [     -8792.5920] [ 1678] [depth=    1]
. (    5 sec) [     -8791.5164] [ 1678] [depth=    1]
. (    5 sec) [     -8788.1612] [ 1678] [depth=    1]
. (    7 sec) [     -8787.8672] [ 1678] [depth=    1]
. (    8 sec) [     -8787.2418] [ 1674] [depth=    2]
. (    8 sec) [     -8782.2425] [ 1674] [depth=    1]
. (    8 sec) [     -8781.8580] [ 1674] [depth=    1]
. (    9 sec) [     -8773.2230] [ 1669] [depth=    1]
. (    9 sec) [     -8771.1462] [ 1670] [depth=    1]
. (   10 sec) [     -8768.7619] [ 1671] [depth=    1]
. (   10 sec) [     -8764.7859] [ 1671] [depth=    1]
. (   11 sec) [     -8759.9181] [ 1668] [depth=    2]
. (   13 sec) [     -8727.7206] [Branch lengths     ]
. (   13 sec) [     -8727.0579] [Alpha              ][  0.971722]
. (   24 sec) [     -8725.4998] [Branch lengths     ]
. (   24 sec) [     -8725.4998] [Topology           ]
. (   26 sec) [     -8725.4342] [Topology           ]
. (   28 sec) [     -8725.4122] [Topology           ]
. (   29 sec) [     -8725.4022] [Topology           ]
. (   31 sec) [     -8725.3973] [Topology           ]
. (   33 sec) [     -8725.3948] [Topology           ]
. (   35 sec) [     -8725.3936] [Topology           ]
. (   35 sec) [     -8725.3810] [Alpha              ][  0.985366]
. (   35 sec) [     -8725.3810] [Topology           ]
. (   37 sec) [     -8725.3784] [Topology           ]
. (   39 sec) [     -8725.3771] [Topology           ]
. (   41 sec) [     -8725.3764] [Topology           ]
. (   41 sec) [     -8725.3763] [Alpha              ][  0.986850]
. (   41 sec) [     -8725.3763] [Topology           ]
. (   43 sec) [     -8725.3758] [Topology           ]
. (   43 sec) [     -8725.3758] [Alpha              ][  0.986850]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -8725.375814.

. Printing the most likely tree in file 'proteic_M2478_30x276_2005.phy_phyml_tree.txt'...


. Time used 0h0m58s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
55.81user 0.00system 0:58.45elapsed 95%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps