.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2479_30x627_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 521 patterns found. (out of a total of 627 sites) . 123 sites without polymorphism (19.62%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 37Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -18178.5487] [Alpha ][ 0.611907] . ( 7 sec) [ -18170.4801] [ 3275] [depth= 2] . ( 12 sec) [ -18165.9849] [ 3274] [depth= 1] . ( 13 sec) [ -18160.9900] [ 3271] [depth= 1] . ( 14 sec) [ -18159.6973] [ 3271] [depth= 1] . ( 16 sec) [ -18153.0623] [ 3260] [depth= 3] . ( 17 sec) [ -18146.8228] [ 3264] [depth= 1] . ( 17 sec) [ -18139.9082] [ 3260] [depth= 2] . ( 18 sec) [ -18136.0958] [ 3263] [depth= 1] . ( 19 sec) [ -18122.9351] [ 3259] [depth= 1] . ( 19 sec) [ -18118.2799] [ 3258] [depth= 1] . ( 21 sec) [ -18114.4746] [ 3259] [depth= 1] . ( 22 sec) [ -18113.7047] [ 3258] [depth= 1] . ( 24 sec) [ -18067.0005] [Branch lengths ] . ( 25 sec) [ -18063.5474] [Alpha ][ 0.705950] . ( 29 sec) [ -18062.9917] [ 3256] [depth= 1] . ( 45 sec) [ -18059.2244] [Branch lengths ] . ( 46 sec) [ -18059.0109] [Alpha ][ 0.731594] . ( 66 sec) [ -18058.0646] [Branch lengths ] . ( 66 sec) [ -18058.0646] [Topology ] . ( 69 sec) [ -18057.0505] [Topology ] . Moving backward . ( 73 sec) [ -18056.4935] [Topology ] . ( 76 sec) [ -18056.2546] [Topology ] . ( 79 sec) [ -18056.2273] [Topology ] . ( 82 sec) [ -18056.2165] [Topology ] . ( 85 sec) [ -18056.2110] [Topology ] . ( 88 sec) [ -18056.2079] [Topology ] . ( 91 sec) [ -18056.2062] [Topology ] . ( 92 sec) [ -18056.0687] [Alpha ][ 0.752117] . ( 92 sec) [ -18056.0687] [Topology ] . ( 95 sec) [ -18056.0511] [Topology ] . ( 98 sec) [ -18056.0424] [Topology ] . ( 101 sec) [ -18056.0376] [Topology ] . ( 104 sec) [ -18056.0350] [Topology ] . ( 107 sec) [ -18056.0335] [Topology ] . ( 110 sec) [ -18056.0326] [Topology ] . ( 111 sec) [ -18056.0279] [Alpha ][ 0.756064] . ( 111 sec) [ -18056.0279] [Topology ] . ( 114 sec) [ -18056.0263] [Topology ] . ( 117 sec) [ -18056.0254] [Topology ] . ( 118 sec) [ -18056.0254] [Alpha ][ 0.756820] . ( 118 sec) [ -18056.0254] [Topology ] . ( 121 sec) [ -18056.0247] [Topology ] . ( 122 sec) [ -18056.0247] [Alpha ][ 0.756820] . Checking for NNIs, optimizing five branches... . ( 148 sec) [ -18055.9514] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -18055.951436. . Printing the most likely tree in file 'proteic_M2479_30x627_2005.phy_phyml_tree.txt'... . Time used 0h3m8s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 171.83user 0.00system 3:08.31elapsed 91%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps