.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2480_40x430_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 399 patterns found. (out of a total of 430 sites) . 44 sites without polymorphism (10.23%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 38Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -24093.8919] [Alpha ][ 0.744037] . ( 7 sec) [ -24093.1300] [ 5023] [depth= 1] . ( 7 sec) [ -24074.3469] [ 5017] [depth= 1] . ( 11 sec) [ -24074.2184] [ 5018] [depth= 1] . ( 12 sec) [ -24070.3588] [ 5017] [depth= 1] . ( 12 sec) [ -24070.3081] [ 5010] [depth= 1] . ( 13 sec) [ -24059.4258] [ 5017] [depth= 1] . ( 13 sec) [ -24053.8688] [ 5012] [depth= 1] . ( 14 sec) [ -24053.8338] [ 5016] [depth= 1] . ( 15 sec) [ -24044.7092] [ 5012] [depth= 1] . ( 15 sec) [ -24041.4949] [ 5006] [depth= 1] . ( 15 sec) [ -24038.2194] [ 5009] [depth= 1] . ( 16 sec) [ -24037.4616] [ 5006] [depth= 1] . ( 18 sec) [ -24029.6509] [ 5007] [depth= 2] . ( 19 sec) [ -24020.6329] [ 5008] [depth= 1] . ( 20 sec) [ -24018.8203] [ 5011] [depth= 1] . ( 20 sec) [ -24013.7308] [ 5010] [depth= 1] . ( 21 sec) [ -24002.8635] [ 5009] [depth= 1] . ( 21 sec) [ -23998.4275] [ 5005] [depth= 3] . ( 22 sec) [ -23998.1999] [ 5007] [depth= 1] . ( 24 sec) [ -23996.6379] [ 5006] [depth= 1] . ( 24 sec) [ -23985.9408] [ 5006] [depth= 2] . ( 25 sec) [ -23982.5398] [ 5010] [depth= 1] . ( 25 sec) [ -23978.7417] [ 5007] [depth= 1] . ( 26 sec) [ -23971.6260] [ 5002] [depth= 1] . ( 26 sec) [ -23969.3690] [ 5007] [depth= 1] . ( 27 sec) [ -23967.9902] [ 5007] [depth= 1] . ( 31 sec) [ -23967.7114] [ 5011] [depth= 1] . ( 34 sec) [ -23904.1601] [Branch lengths ] . ( 35 sec) [ -23899.7474] [Alpha ][ 0.869942] . ( 40 sec) [ -23899.6305] [ 5007] [depth= 1] . ( 46 sec) [ -23899.3447] [ 5008] [depth= 1] . ( 48 sec) [ -23898.8032] [ 5008] [depth= 1] . ( 50 sec) [ -23898.7665] [ 5008] [depth= 1] . ( 51 sec) [ -23898.4379] [ 5010] [depth= 2] . ( 61 sec) [ -23891.3883] [Branch lengths ] . ( 62 sec) [ -23891.2072] [Alpha ][ 0.897701] . ( 67 sec) [ -23891.0337] [ 5010] [depth= 1] . ( 74 sec) [ -23890.2457] [ 5009] [depth= 1] . ( 77 sec) [ -23889.6387] [ 5010] [depth= 1] . ( 89 sec) [ -23885.2955] [Branch lengths ] . ( 90 sec) [ -23885.2781] [Alpha ][ 0.906821] . ( 117 sec) [ -23885.0003] [Branch lengths ] . ( 117 sec) [ -23885.0003] [Topology ] . ( 120 sec) [ -23883.7012] [Topology ] . ( 124 sec) [ -23881.6122] [Topology ] . ( 127 sec) [ -23881.4147] [Topology ] . ( 133 sec) [ -23876.7951] [Topology ] . ( 139 sec) [ -23875.7569] [Topology ] . ( 145 sec) [ -23875.6827] [Topology ] . ( 152 sec) [ -23875.6703] [Topology ] . ( 158 sec) [ -23875.6676] [Topology ] . ( 165 sec) [ -23875.6669] [Topology ] . ( 166 sec) [ -23875.6612] [Alpha ][ 0.911967] . ( 166 sec) [ -23875.6612] [Topology ] . ( 173 sec) [ -23875.6603] [Topology ] . ( 174 sec) [ -23875.6603] [Alpha ][ 0.911967] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -23875.660277. . Printing the most likely tree in file 'proteic_M2480_40x430_2005.phy_phyml_tree.txt'... . Time used 0h3m50s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 177.49user 0.00system 3:50.92elapsed 76%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps