.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2512_14x717_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 703 patterns found. (out of a total of 717 sites) . 39 sites without polymorphism (5.44%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 21Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -20898.1075] [Alpha ][ 1.719622] . ( 1 sec) [ -20895.9923] [ 4555] [depth= 1] . ( 2 sec) [ -20889.3372] [ 4547] [depth= 2] . ( 4 sec) [ -20862.9583] [ 4555] [depth= 2] . ( 5 sec) [ -20850.7059] [ 4564] [depth= 1] . ( 5 sec) [ -20759.8517] [ 4555] [depth= 1] . ( 6 sec) [ -20502.4901] [ 4539] [depth= 1] . ( 6 sec) [ -20296.2027] [ 4535] [depth= 1] . ( 7 sec) [ -20252.7903] [ 4531] [depth= 1] . ( 9 sec) [ -20239.1556] [ 4526] [depth= 1] . ( 11 sec) [ -20129.1127] [Branch lengths ] . ( 11 sec) [ -20128.1181] [Alpha ][ 1.567799] . ( 16 sec) [ -20126.8622] [ 4525] [depth= 1] . ( 19 sec) [ -20125.9360] [ 4529] [depth= 1] . ( 20 sec) [ -20123.9415] [ 4529] [depth= 1] . ( 22 sec) [ -20109.7443] [Branch lengths ] . ( 23 sec) [ -20107.9414] [Alpha ][ 1.400602] . ( 25 sec) [ -20106.5465] [ 4516] [depth= 2] . ( 32 sec) [ -20101.5931] [Branch lengths ] . ( 33 sec) [ -20101.1998] [Alpha ][ 1.331197] . ( 41 sec) [ -20100.3392] [Branch lengths ] . ( 41 sec) [ -20100.3392] [Topology ] . ( 43 sec) [ -20100.2452] [Topology ] . ( 45 sec) [ -20100.2018] [Topology ] . ( 47 sec) [ -20100.1759] [Topology ] . ( 49 sec) [ -20100.1584] [Topology ] . ( 51 sec) [ -20100.1454] [Topology ] . ( 54 sec) [ -20100.1351] [Topology ] . ( 54 sec) [ -20099.9738] [Alpha ][ 1.289775] . ( 54 sec) [ -20099.9738] [Topology ] . ( 58 sec) [ -20099.9098] [Topology ] . ( 62 sec) [ -20099.8876] [Topology ] . ( 66 sec) [ -20099.8753] [Topology ] . ( 70 sec) [ -20099.8669] [Topology ] . ( 73 sec) [ -20099.8606] [Topology ] . ( 77 sec) [ -20099.8555] [Topology ] . ( 78 sec) [ -20099.8199] [Alpha ][ 1.270277] . ( 78 sec) [ -20099.8199] [Topology ] . ( 82 sec) [ -20099.7998] [Topology ] . ( 86 sec) [ -20099.7913] [Topology ] . ( 89 sec) [ -20099.7861] [Topology ] . ( 93 sec) [ -20099.7822] [Topology ] . ( 97 sec) [ -20099.7792] [Topology ] . ( 101 sec) [ -20099.7767] [Topology ] . ( 102 sec) [ -20099.7672] [Alpha ][ 1.260322] . ( 102 sec) [ -20099.7672] [Topology ] . ( 106 sec) [ -20099.7607] [Topology ] . ( 110 sec) [ -20099.7575] [Topology ] . ( 113 sec) [ -20099.7552] [Topology ] . ( 117 sec) [ -20099.7535] [Topology ] . ( 121 sec) [ -20099.7521] [Topology ] . ( 125 sec) [ -20099.7508] [Topology ] . ( 126 sec) [ -20099.7482] [Alpha ][ 1.255021] . ( 126 sec) [ -20099.7482] [Topology ] . ( 130 sec) [ -20099.7458] [Topology ] . ( 134 sec) [ -20099.7445] [Topology ] . ( 138 sec) [ -20099.7435] [Topology ] . ( 142 sec) [ -20099.7426] [Topology ] . ( 142 sec) [ -20099.7420] [Alpha ][ 1.252456] . ( 143 sec) [ -20099.7420] [Topology ] . ( 146 sec) [ -20099.7409] [Topology ] . ( 150 sec) [ -20099.7402] [Topology ] . ( 151 sec) [ -20099.7401] [Alpha ][ 1.251203] . ( 151 sec) [ -20099.7401] [Topology ] . ( 154 sec) [ -20099.7393] [Topology ] . ( 154 sec) [ -20099.7392] [Alpha ][ 1.249952] . Checking for NNIs, optimizing five branches... . ( 204 sec) [ -20099.6640] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -20099.664045. . Printing the most likely tree in file 'proteic_M2512_14x717_2006.phy_phyml_tree.txt'... . Time used 0h4m10s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 156.15user 0.00system 4:10.11elapsed 62%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps