.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2558_27x1060_2005.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 746 patterns found. (out of a total of 1060 sites) . 362 sites without polymorphism (34.15%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 47Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -37472.1429] [Alpha ][ 0.689004] . ( 3 sec) [ -37441.7027] [ 7658] [depth= 1] . ( 4 sec) [ -37425.7851] [ 7666] [depth= 1] . ( 9 sec) [ -37424.7015] [ 7669] [depth= 1] . ( 12 sec) [ -37395.6519] [ 7666] [depth= 1] . ( 13 sec) [ -37395.0472] [ 7667] [depth= 2] . ( 15 sec) [ -37390.6364] [ 7666] [depth= 1] . ( 18 sec) [ -37369.2911] [ 7662] [depth= 2] . ( 19 sec) [ -37358.2377] [ 7651] [depth= 1] . ( 20 sec) [ -37357.1536] [ 7644] [depth= 1] . ( 21 sec) [ -37353.8751] [ 7645] [depth= 1] . ( 25 sec) [ -37342.6969] [ 7644] [depth= 4] . ( 26 sec) [ -37341.6775] [ 7643] [depth= 6] . ( 29 sec) [ -37339.6101] [ 7637] [depth= 1] . ( 31 sec) [ -37332.4216] [ 7633] [depth= 1] . ( 36 sec) [ -37233.1794] [Branch lengths ] . ( 37 sec) [ -37231.8376] [Alpha ][ 0.648831] . ( 45 sec) [ -37229.2603] [ 7637] [depth= 1] . ( 51 sec) [ -37227.4603] [ 7638] [depth= 1] . ( 52 sec) [ -37224.2766] [ 7640] [depth= 1] . ( 53 sec) [ -37224.0195] [ 7643] [depth= 1] . ( 57 sec) [ -37220.1799] [ 7638] [depth= 1] . ( 60 sec) [ -37220.0672] [ 7638] [depth= 2] . ( 67 sec) [ -37199.0536] [Branch lengths ] . ( 68 sec) [ -37197.8004] [Alpha ][ 0.612199] . ( 84 sec) [ -37197.7509] [ 7636] [depth= 1] . ( 98 sec) [ -37192.5261] [Branch lengths ] . ( 98 sec) [ -37192.0332] [Alpha ][ 0.590294] . ( 127 sec) [ -37190.4681] [Branch lengths ] . ( 128 sec) [ -37190.4681] [Topology ] . ( 133 sec) [ -37190.2035] [Topology ] . ( 140 sec) [ -37189.2398] [Topology ] . ( 146 sec) [ -37189.0414] [Topology ] . ( 154 sec) [ -37188.9511] [Topology ] . ( 161 sec) [ -37188.9027] [Topology ] . ( 169 sec) [ -37188.8746] [Topology ] . ( 176 sec) [ -37188.8578] [Topology ] . ( 178 sec) [ -37188.1865] [Alpha ][ 0.565697] . ( 179 sec) [ -37188.1865] [Topology ] . ( 186 sec) [ -37187.9038] [Topology ] . ( 194 sec) [ -37187.8046] [Topology ] . ( 201 sec) [ -37187.7608] [Topology ] . ( 209 sec) [ -37187.7405] [Topology ] . ( 216 sec) [ -37187.7307] [Topology ] . ( 224 sec) [ -37187.7258] [Topology ] . ( 225 sec) [ -37187.4924] [Alpha ][ 0.551824] . ( 226 sec) [ -37187.4924] [Topology ] . ( 234 sec) [ -37187.3771] [Topology ] . ( 241 sec) [ -37187.3373] [Topology ] . ( 250 sec) [ -37187.3204] [Topology ] . ( 258 sec) [ -37187.3129] [Topology ] . ( 266 sec) [ -37187.3096] [Topology ] . ( 273 sec) [ -37187.3080] [Topology ] . ( 275 sec) [ -37187.2038] [Alpha ][ 0.542900] . ( 276 sec) [ -37187.2038] [Topology ] . ( 283 sec) [ -37187.1533] [Topology ] . ( 291 sec) [ -37187.1364] [Topology ] . ( 298 sec) [ -37187.1294] [Topology ] . ( 306 sec) [ -37187.1264] [Topology ] . ( 313 sec) [ -37187.1251] [Topology ] . ( 321 sec) [ -37187.1245] [Topology ] . ( 322 sec) [ -37187.0757] [Alpha ][ 0.536486] . ( 323 sec) [ -37187.0757] [Topology ] . ( 330 sec) [ -37187.0491] [Topology ] . ( 338 sec) [ -37187.0403] [Topology ] . ( 345 sec) [ -37187.0368] [Topology ] . ( 353 sec) [ -37187.0353] [Topology ] . ( 360 sec) [ -37187.0346] [Topology ] . ( 362 sec) [ -37187.0139] [Alpha ][ 0.532320] . ( 362 sec) [ -37187.0139] [Topology ] . ( 370 sec) [ -37187.0014] [Topology ] . ( 377 sec) [ -37186.9973] [Topology ] . ( 385 sec) [ -37186.9956] [Topology ] . ( 392 sec) [ -37186.9949] [Topology ] . ( 394 sec) [ -37186.9867] [Alpha ][ 0.529673] . ( 394 sec) [ -37186.9867] [Topology ] . ( 402 sec) [ -37186.9805] [Topology ] . ( 409 sec) [ -37186.9784] [Topology ] . ( 417 sec) [ -37186.9776] [Topology ] . ( 418 sec) [ -37186.9741] [Alpha ][ 0.527949] . ( 419 sec) [ -37186.9741] [Topology ] . ( 427 sec) [ -37186.9708] [Topology ] . ( 434 sec) [ -37186.9696] [Topology ] . ( 442 sec) [ -37186.9691] [Topology ] . ( 443 sec) [ -37186.9674] [Alpha ][ 0.526719] . ( 444 sec) [ -37186.9674] [Topology ] . ( 451 sec) [ -37186.9656] [Topology ] . ( 458 sec) [ -37186.9650] [Topology ] . ( 459 sec) [ -37186.9644] [Alpha ][ 0.525978] . ( 460 sec) [ -37186.9644] [Topology ] . ( 466 sec) [ -37186.9633] [Topology ] . ( 473 sec) [ -37186.9629] [Topology ] . ( 474 sec) [ -37186.9626] [Alpha ][ 0.525402] . ( 475 sec) [ -37186.9626] [Topology ] . ( 481 sec) [ -37186.9619] [Topology ] . ( 482 sec) [ -37186.9619] [Alpha ][ 0.524876] . Checking for NNIs, optimizing five branches... . ( 567 sec) [ -37186.7998] [Topology ] . Checking for NNIs, optimizing five branches... . ( 651 sec) [ -37186.2628] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -37186.262754. . Printing the most likely tree in file 'proteic_M2558_27x1060_2005.phy_phyml_tree.txt'... . Time used 0h12m13s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 431.66user 0.00system 12:14.10elapsed 58%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps