.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2636_20x1275_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 775 patterns found. (out of a total of 1275 sites) . 495 sites without polymorphism (38.82%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 35Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -19286.6097] [Alpha ][ 0.500960] . ( 2 sec) [ -19264.9501] [ 2961] [depth= 3] . ( 3 sec) [ -19245.5435] [ 2957] [depth= 1] . ( 4 sec) [ -19229.4626] [ 2949] [depth= 2] . ( 4 sec) [ -19226.1529] [ 2951] [depth= 1] . ( 5 sec) [ -19225.7052] [ 2954] [depth= 1] . ( 6 sec) [ -19222.6604] [ 2951] [depth= 1] . ( 8 sec) [ -19182.6801] [ 2956] [depth= 1] . ( 13 sec) [ -19179.7266] [ 2967] [depth= 1] . ( 13 sec) [ -19178.2846] [ 2970] [depth= 1] . ( 15 sec) [ -19168.3639] [ 2958] [depth= 1] . ( 15 sec) [ -19160.2844] [ 2956] [depth= 1] . ( 16 sec) [ -19158.2599] [ 2960] [depth= 1] . ( 16 sec) [ -19144.0572] [ 2956] [depth= 1] . ( 19 sec) [ -19085.8518] [Branch lengths ] . ( 20 sec) [ -19084.0031] [Alpha ][ 0.456459] . ( 21 sec) [ -19078.4423] [ 2950] [depth= 1] . ( 23 sec) [ -19076.6612] [ 2952] [depth= 1] . ( 37 sec) [ -19068.0542] [Branch lengths ] . ( 38 sec) [ -19068.0501] [Alpha ][ 0.458428] . ( 60 sec) [ -19066.9898] [Branch lengths ] . ( 60 sec) [ -19066.9898] [Topology ] . ( 66 sec) [ -19066.8724] [Topology ] . ( 72 sec) [ -19066.8262] [Topology ] . ( 78 sec) [ -19066.8011] [Topology ] . ( 84 sec) [ -19066.7872] [Topology ] . ( 89 sec) [ -19066.7794] [Topology ] . ( 95 sec) [ -19066.7750] [Topology ] . ( 96 sec) [ -19066.7719] [Alpha ][ 0.460129] . ( 97 sec) [ -19066.7719] [Topology ] . ( 102 sec) [ -19066.7690] [Topology ] . ( 108 sec) [ -19066.7675] [Topology ] . ( 114 sec) [ -19066.7666] [Topology ] . ( 115 sec) [ -19066.7666] [Alpha ][ 0.460129] . ( 115 sec) [ -19066.7666] [Topology ] . ( 121 sec) [ -19066.7661] [Topology ] . ( 122 sec) [ -19066.7661] [Alpha ][ 0.460129] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -19066.766056. . Printing the most likely tree in file 'proteic_M2636_20x1275_2006.phy_phyml_tree.txt'... . Time used 0h2m52s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 108.63user 0.00system 2:51.79elapsed 63%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps