.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2638_18x378_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 75 patterns found. (out of a total of 378 sites) . 321 sites without polymorphism (84.92%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 3Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -1700.8671] [Alpha ][ 0.500960] . ( 1 sec) [ -1700.1272] [ 82] [depth= 1] . ( 1 sec) [ -1699.4578] [ 82] [depth= 1] . ( 1 sec) [ -1698.1292] [ 80] [depth= 3] . ( 1 sec) [ -1697.8197] [ 81] [depth= 3] . ( 2 sec) [ -1696.9534] [ 81] [depth= 2] . ( 2 sec) [ -1696.8905] [ 81] [depth= 5] . ( 3 sec) [ -1696.2921] [ 81] [depth= 3] . ( 3 sec) [ -1696.1219] [ 81] [depth= 1] . ( 3 sec) [ -1696.0179] [ 81] [depth= 1] . ( 3 sec) [ -1695.9450] [ 81] [depth= 2] . ( 3 sec) [ -1695.8585] [ 81] [depth= 1] . ( 4 sec) [ -1695.0528] [Branch lengths ] . ( 4 sec) [ -1692.5531] [Alpha ][ 0.250961] . ( 8 sec) [ -1692.5439] [Branch lengths ] . ( 8 sec) [ -1692.5439] [Topology ] . ( 9 sec) [ -1692.5436] [Topology ] . ( 9 sec) [ -1692.1628] [Alpha ][ 0.168004] . ( 9 sec) [ -1692.1628] [Topology ] . ( 9 sec) [ -1692.1591] [Topology ] . ( 10 sec) [ -1692.1583] [Topology ] . ( 10 sec) [ -1692.1582] [Alpha ][ 0.166750] . ( 10 sec) [ -1692.1582] [Topology ] . ( 10 sec) [ -1692.1577] [Topology ] . ( 10 sec) [ -1692.1577] [Alpha ][ 0.166583] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -1692.157738. . Printing the most likely tree in file 'proteic_M2638_18x378_2006.phy_phyml_tree.txt'... . Time used 0h0m13s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 12.10user 0.00system 0:12.60elapsed 96%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps