..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M2639_19x331_2006.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 227 patterns found. (out of a total of 331 sites) 

. 124 sites without polymorphism (37.46%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 10Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    0 sec) [     -5780.2367] [Alpha              ][  0.500960]
. (    3 sec) [     -5774.8860] [  941] [depth=    2]
. (    3 sec) [     -5767.3329] [  943] [depth=    1]
. (    4 sec) [     -5765.4178] [  941] [depth=    1]
. (    4 sec) [     -5756.1605] [  939] [depth=    1]
. (    6 sec) [     -5740.2938] [Branch lengths     ]
. (    7 sec) [     -5740.1954] [Alpha              ][  0.521736]
. (   12 sec) [     -5739.1802] [Branch lengths     ]
. (   12 sec) [     -5739.1802] [Topology           ]
. (   13 sec) [     -5739.1290] [Topology           ]
. (   14 sec) [     -5739.1153] [Topology           ]
. (   16 sec) [     -5739.1091] [Topology           ]
. (   18 sec) [     -5739.1062] [Topology           ]
. (   19 sec) [     -5739.1048] [Topology           ]
. (   21 sec) [     -5739.1041] [Topology           ]
. (   21 sec) [     -5739.0616] [Alpha              ][  0.535522]
. (   22 sec) [     -5739.0616] [Topology           ]
. (   23 sec) [     -5739.0552] [Topology           ]
. (   25 sec) [     -5739.0523] [Topology           ]
. (   27 sec) [     -5739.0510] [Topology           ]
. (   29 sec) [     -5739.0503] [Topology           ]
. (   29 sec) [     -5739.0489] [Alpha              ][  0.538120]
. (   29 sec) [     -5739.0489] [Topology           ]
. (   31 sec) [     -5739.0481] [Topology           ]
. (   31 sec) [     -5739.0480] [Alpha              ][  0.538658]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -5739.048038.

. Printing the most likely tree in file 'proteic_M2639_19x331_2006.phy_phyml_tree.txt'...


. Time used 0h0m46s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
28.36user 0.00system 0:45.90elapsed 61%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps