.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2641_18x326_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 243 patterns found. (out of a total of 326 sites) . 100 sites without polymorphism (30.67%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 10Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -5190.7718] [Alpha ][ 0.607649] . ( 2 sec) [ -5190.4764] [ 831] [depth= 1] . ( 5 sec) [ -5190.3233] [ 829] [depth= 1] . ( 5 sec) [ -5189.0756] [ 828] [depth= 2] . ( 5 sec) [ -5182.8759] [ 829] [depth= 1] . ( 7 sec) [ -5156.2250] [Branch lengths ] . ( 7 sec) [ -5155.8502] [Alpha ][ 0.663955] . ( 12 sec) [ -5154.0030] [Branch lengths ] . ( 13 sec) [ -5154.0030] [Topology ] . ( 13 sec) [ -5153.7859] [Topology ] . ( 14 sec) [ -5153.7117] [Topology ] . ( 15 sec) [ -5153.6754] [Topology ] . ( 16 sec) [ -5153.6570] [Topology ] . ( 17 sec) [ -5153.6475] [Topology ] . ( 18 sec) [ -5153.6427] [Topology ] . ( 18 sec) [ -5153.5885] [Alpha ][ 0.686253] . ( 18 sec) [ -5153.5885] [Topology ] . ( 19 sec) [ -5153.5829] [Topology ] . ( 20 sec) [ -5153.5804] [Topology ] . ( 21 sec) [ -5153.5791] [Topology ] . ( 22 sec) [ -5153.5785] [Topology ] . ( 22 sec) [ -5153.5783] [Alpha ][ 0.687450] . ( 22 sec) [ -5153.5783] [Topology ] . ( 23 sec) [ -5153.5780] [Topology ] . ( 23 sec) [ -5153.5780] [Alpha ][ 0.687450] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -5153.577954. . Printing the most likely tree in file 'proteic_M2641_18x326_2006.phy_phyml_tree.txt'... . Time used 0h0m30s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 28.42user 0.00system 0:30.04elapsed 94%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps