.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M2899_25x444_2006.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 365 patterns found. (out of a total of 444 sites) . 112 sites without polymorphism (25.23%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 21Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 0 sec) [ -10056.3189] [Alpha ][ 0.527413] . ( 2 sec) [ -10055.9442] [ 1783] [depth= 1] . ( 2 sec) [ -10053.8300] [ 1782] [depth= 1] . ( 4 sec) [ -10049.2226] [ 1781] [depth= 1] . ( 6 sec) [ -10043.1897] [ 1777] [depth= 1] . ( 6 sec) [ -10033.6410] [ 1778] [depth= 1] . ( 7 sec) [ -10032.8649] [ 1776] [depth= 1] . ( 7 sec) [ -10032.5234] [ 1778] [depth= 1] . ( 7 sec) [ -10027.1759] [ 1776] [depth= 1] . ( 7 sec) [ -10019.5806] [ 1778] [depth= 1] . ( 8 sec) [ -10017.6010] [ 1780] [depth= 1] . ( 9 sec) [ -10016.2662] [ 1778] [depth= 1] . ( 11 sec) [ -10012.0156] [ 1776] [depth= 1] . ( 11 sec) [ -10008.7840] [ 1775] [depth= 1] . ( 12 sec) [ -10005.0164] [ 1775] [depth= 1] . ( 12 sec) [ -10004.9587] [ 1775] [depth= 1] . ( 12 sec) [ -9995.0019] [ 1775] [depth= 2] . ( 14 sec) [ -9973.7280] [Branch lengths ] . ( 15 sec) [ -9970.9761] [Alpha ][ 0.620746] . ( 26 sec) [ -9966.4579] [Branch lengths ] . ( 26 sec) [ -9966.4579] [Topology ] . ( 28 sec) [ -9964.4970] [Topology ] . ( 30 sec) [ -9963.7880] [Topology ] . ( 32 sec) [ -9963.4041] [Topology ] . ( 34 sec) [ -9963.1634] [Topology ] . ( 36 sec) [ -9963.0088] [Topology ] . ( 38 sec) [ -9962.9088] [Topology ] . ( 40 sec) [ -9962.8439] [Topology ] . ( 40 sec) [ -9962.6601] [Alpha ][ 0.646863] . ( 40 sec) [ -9962.6601] [Topology ] . ( 42 sec) [ -9962.6097] [Topology ] . ( 44 sec) [ -9962.5795] [Topology ] . ( 46 sec) [ -9962.5602] [Topology ] . ( 48 sec) [ -9962.5479] [Topology ] . ( 49 sec) [ -9962.5400] [Topology ] . ( 51 sec) [ -9962.5350] [Topology ] . ( 52 sec) [ -9962.5347] [Alpha ][ 0.647907] . ( 52 sec) [ -9962.5347] [Topology ] . ( 54 sec) [ -9962.5315] [Topology ] . ( 56 sec) [ -9962.5294] [Topology ] . ( 57 sec) [ -9962.5280] [Topology ] . ( 59 sec) [ -9962.5272] [Topology ] . ( 60 sec) [ -9962.5272] [Alpha ][ 0.647907] . ( 60 sec) [ -9962.5272] [Topology ] . ( 62 sec) [ -9962.5266] [Topology ] . ( 62 sec) [ -9962.5266] [Alpha ][ 0.647907] . Checking for NNIs, optimizing five branches... . ( 77 sec) [ -9961.3274] [Topology ] . Checking for NNIs, optimizing five branches... . ( 94 sec) [ -9960.6244] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -9960.624443. . Printing the most likely tree in file 'proteic_M2899_25x444_2006.phy_phyml_tree.txt'... . Time used 0h1m49s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 108.33user 0.00system 1:49.91elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps