.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1376_36x484_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 392 patterns found. (out of a total of 484 sites) . 132 sites without polymorphism (27.27%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 34Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -11637.9226] [Alpha ][ 0.518665] . ( 14 sec) [ -11631.6742] [ 1985] [depth= 2] . ( 14 sec) [ -11621.6295] [ 1984] [depth= 1] . ( 15 sec) [ -11620.5240] [ 1985] [depth= 1] . ( 28 sec) [ -11619.8317] [ 1982] [depth= 1] . ( 41 sec) [ -11609.7200] [ 1988] [depth= 2] . ( 42 sec) [ -11608.6178] [ 1989] [depth= 1] . ( 54 sec) [ -11607.0074] [ 1990] [depth= 2] . ( 54 sec) [ -11599.9160] [ 1984] [depth= 2] . ( 75 sec) [ -11597.2386] [ 1984] [depth= 1] . ( 82 sec) [ -11596.8186] [ 1987] [depth= 1] . ( 281 sec) [ -11595.2558] [ 1989] [depth= 1] . ( 282 sec) [ -11593.4193] [ 1987] [depth= 1] . ( 368 sec) [ -11592.3146] [ 1989] [depth= 1] . ( 385 sec) [ -11588.2502] [ 1988] [depth= 1] . ( 386 sec) [ -11583.5716] [ 1989] [depth= 1] . ( 400 sec) [ -11582.8126] [ 1993] [depth= 1] . ( 401 sec) [ -11582.5599] [ 1991] [depth= 1] . ( 401 sec) [ -11579.7474] [ 1987] [depth= 1] . ( 405 sec) [ -11578.3774] [ 1986] [depth= 1] . ( 406 sec) [ -11576.9045] [ 1987] [depth= 1] . ( 460 sec) [ -11575.7663] [ 1986] [depth= 1] . ( 497 sec) [ -11538.2300] [Branch lengths ] . ( 498 sec) [ -11535.8415] [Alpha ][ 0.600355] . ( 538 sec) [ -11535.3104] [ 1985] [depth= 1] . ( 956 sec) [ -11534.6567] [ 1985] [depth= 1] . ( 1056 sec) [ -11534.4673] [ 1985] [depth= 1] . ( 1192 sec) [ -11530.7399] [Branch lengths ] . ( 1192 sec) [ -11530.6210] [Alpha ][ 0.620040] . ( 1927 sec) [ -11530.0763] [Branch lengths ] . ( 1927 sec) [ -11530.0763] [Topology ] . ( 1931 sec) [ -11530.0026] [Topology ] . ( 1936 sec) [ -11529.9748] [Topology ] . ( 1940 sec) [ -11529.9604] [Topology ] . ( 1943 sec) [ -11529.9526] [Topology ] . ( 1947 sec) [ -11529.9483] [Topology ] . ( 1951 sec) [ -11529.9460] [Topology ] . ( 1952 sec) [ -11529.8830] [Alpha ][ 0.635152] . ( 1952 sec) [ -11529.8830] [Topology ] . ( 1956 sec) [ -11529.8730] [Topology ] . ( 1960 sec) [ -11529.8682] [Topology ] . ( 1964 sec) [ -11529.8656] [Topology ] . ( 1968 sec) [ -11529.8641] [Topology ] . ( 1972 sec) [ -11529.8633] [Topology ] . ( 1973 sec) [ -11529.8621] [Alpha ][ 0.637238] . ( 1973 sec) [ -11529.8621] [Topology ] . ( 1977 sec) [ -11529.8613] [Topology ] . ( 1978 sec) [ -11529.8613] [Alpha ][ 0.637238] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -11529.861279. . Printing the most likely tree in file 'proteic_M1376_36x484_2003.phy_phyml_tree.txt'... . Time used 0h33m29s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 1455.58user 0.00system 33:29.50elapsed 72%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps