..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1377_19x1566_2003.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 921 patterns found. (out of a total of 1566 sites) 

. 698 sites without polymorphism (44.57%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 39Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    2 sec) [    -17793.6885] [Alpha              ][  0.500960]
. (   26 sec) [    -17790.9930] [ 2484] [depth=    1]
. (   27 sec) [    -17789.5885] [ 2486] [depth=    1]
. (   53 sec) [    -17780.0007] [ 2470] [depth=    1]
. (   53 sec) [    -17748.4106] [ 2467] [depth=    4]
. (   92 sec) [    -17692.7793] [ 2457] [depth=    4]
. (   93 sec) [    -17683.5541] [ 2454] [depth=    3]
. (  103 sec) [    -17669.3304] [ 2456] [depth=    3]
. (  113 sec) [    -17666.8827] [ 2457] [depth=    1]
. (  113 sec) [    -17639.5784] [ 2450] [depth=    4]
. (  114 sec) [    -17637.8291] [ 2448] [depth=    1]
. (  115 sec) [    -17635.0257] [ 2451] [depth=    3]
. (  116 sec) [    -17630.9459] [ 2460] [depth=    1]
. (  125 sec) [    -17627.8661] [ 2457] [depth=    1]
. (  126 sec) [    -17626.4651] [ 2459] [depth=    1]
. (  173 sec) [    -17621.7974] [ 2460] [depth=    1]
. (  183 sec) [    -17593.2880] [Branch lengths     ]
. (  184 sec) [    -17593.0826] [Alpha              ][  0.518577]
. (  227 sec) [    -17568.7357] [ 2451] [depth=    1]
. (  312 sec) [    -17568.0733] [ 2445] [depth=    3]
. (  361 sec) [    -17566.2837] [ 2446] [depth=    4]
. (  394 sec) [    -17563.1045] [ 2444] [depth=    1]
. (  538 sec) [    -17553.9193] [Branch lengths     ]
. (  539 sec) [    -17553.8091] [Alpha              ][  0.531665]
. (  972 sec) [    -17553.2150] [Branch lengths     ]
. (  972 sec) [    -17553.2150] [Topology           ]
. (  977 sec) [    -17553.1839] [Topology           ]
. (  982 sec) [    -17553.1753] [Topology           ]
. (  987 sec) [    -17553.1719] [Topology           ]
. (  992 sec) [    -17553.1703] [Topology           ]
. (  997 sec) [    -17553.1696] [Topology           ]
. (  998 sec) [    -17553.1685] [Alpha              ][  0.533014]
. (  998 sec) [    -17553.1685] [Topology           ]
. ( 1003 sec) [    -17553.1681] [Topology           ]
. ( 1004 sec) [    -17553.1681] [Alpha              ][  0.533014]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -17553.168074.

. Printing the most likely tree in file 'proteic_M1377_19x1566_2003.phy_phyml_tree.txt'...


. Time used 0h17m27s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
764.07user 0.00system 17:27.40elapsed 72%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps