.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1378_18x1561_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 855 patterns found. (out of a total of 1561 sites) . 765 sites without polymorphism (49.01%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 34Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -16272.8201] [Alpha ][ 0.500960] . ( 57 sec) [ -16263.8064] [ 2175] [depth= 1] . ( 57 sec) [ -16253.8072] [ 2178] [depth= 5] . ( 58 sec) [ -16238.4504] [ 2174] [depth= 3] . ( 74 sec) [ -16229.2502] [ 2170] [depth= 2] . ( 81 sec) [ -16220.7755] [ 2172] [depth= 3] . ( 82 sec) [ -16206.4392] [ 2169] [depth= 2] . ( 82 sec) [ -16202.1888] [ 2172] [depth= 1] . ( 83 sec) [ -16192.7383] [ 2167] [depth= 5] . ( 83 sec) [ -16148.3496] [ 2168] [depth= 5] . ( 84 sec) [ -16147.6448] [ 2166] [depth= 3] . ( 85 sec) [ -16124.2686] [ 2164] [depth= 2] . ( 85 sec) [ -16118.4757] [ 2161] [depth= 1] . ( 86 sec) [ -16118.0914] [ 2158] [depth= 1] . ( 87 sec) [ -16110.1581] [ 2156] [depth= 1] . ( 88 sec) [ -16109.8237] [ 2159] [depth= 1] . ( 105 sec) [ -16108.2885] [ 2156] [depth= 1] . ( 116 sec) [ -16108.1875] [ 2162] [depth= 2] . ( 117 sec) [ -16106.2596] [ 2167] [depth= 1] . ( 130 sec) [ -16103.9022] [ 2167] [depth= 1] . ( 131 sec) [ -16068.5988] [Branch lengths ] . ( 132 sec) [ -16066.9962] [Alpha ][ 0.453172] . ( 163 sec) [ -16043.0292] [ 2155] [depth= 1] . ( 193 sec) [ -16039.3085] [ 2145] [depth= 2] . ( 215 sec) [ -16035.7525] [ 2139] [depth= 1] . ( 245 sec) [ -16026.6915] [ 2139] [depth= 5] . ( 286 sec) [ -16026.0043] [ 2142] [depth= 1] . ( 339 sec) [ -16018.3240] [Branch lengths ] . ( 340 sec) [ -16018.2605] [Alpha ][ 0.462435] . ( 573 sec) [ -16017.6706] [Branch lengths ] . ( 574 sec) [ -16017.6706] [Topology ] . ( 577 sec) [ -16017.6393] [Topology ] . ( 580 sec) [ -16017.6310] [Topology ] . ( 583 sec) [ -16017.6276] [Topology ] . ( 586 sec) [ -16017.6261] [Topology ] . ( 589 sec) [ -16017.6254] [Topology ] . ( 589 sec) [ -16017.6233] [Alpha ][ 0.464082] . ( 590 sec) [ -16017.6233] [Topology ] . ( 593 sec) [ -16017.6229] [Topology ] . ( 593 sec) [ -16017.6229] [Alpha ][ 0.464082] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -16017.622888. . Printing the most likely tree in file 'proteic_M1378_18x1561_2003.phy_phyml_tree.txt'... . Time used 0h10m18s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 614.58user 0.00system 10:18.36elapsed 99%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps