..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1379_9x1557_2003.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 720 patterns found. (out of a total of 1557 sites) 

. 838 sites without polymorphism (53.82%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 13Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    0 sec) [    -11696.3996] [Alpha              ][  0.540948]
. (   11 sec) [    -11691.9204] [ 1351] [depth=    1]
. (   11 sec) [    -11677.2385] [ 1351] [depth=    1]
. (   11 sec) [    -11664.9913] [ 1354] [depth=    1]
. (   12 sec) [    -11640.4902] [ 1348] [depth=    4]
. (   15 sec) [    -11636.3286] [ 1349] [depth=    1]
. (   28 sec) [    -11621.4755] [Branch lengths     ]
. (   28 sec) [    -11620.6479] [Alpha              ][  0.598071]
. (   70 sec) [    -11620.1700] [Branch lengths     ]
. (   70 sec) [    -11620.1700] [Topology           ]
. (   71 sec) [    -11620.1526] [Topology           ]
. (   72 sec) [    -11620.1491] [Topology           ]
. (   74 sec) [    -11620.1482] [Topology           ]
. (   74 sec) [    -11620.1482] [Alpha              ][  0.598071]
. (   74 sec) [    -11620.1482] [Topology           ]
. (   75 sec) [    -11620.1479] [Topology           ]
. (   75 sec) [    -11620.1479] [Alpha              ][  0.598071]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -11620.147876.

. Printing the most likely tree in file 'proteic_M1379_9x1557_2003.phy_phyml_tree.txt'...


. Time used 0h1m25s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
77.89user 0.00system 1:25.30elapsed 91%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps