..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1380_9x1558_2003.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 695 patterns found. (out of a total of 1558 sites) 

. 832 sites without polymorphism (53.40%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 12Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    0 sec) [    -12075.2784] [Alpha              ][  0.513157]
. (   10 sec) [    -12074.6576] [ 1431] [depth=    1]
. (   10 sec) [    -12063.8515] [ 1431] [depth=    1]
. (   10 sec) [    -12058.0513] [ 1432] [depth=    1]
. (   15 sec) [    -12028.7282] [ 1430] [depth=    5]
. (   21 sec) [    -12028.1801] [ 1424] [depth=    1]
. (   22 sec) [    -12025.6204] [ 1427] [depth=    2]
. (   24 sec) [    -12008.9200] [Branch lengths     ]
. (   25 sec) [    -12007.9127] [Alpha              ][  0.570578]
. (   52 sec) [    -12006.7058] [ 1427] [depth=    1]
. (   60 sec) [    -12005.0823] [Branch lengths     ]
. (   60 sec) [    -12005.0821] [Alpha              ][  0.571155]
. (   96 sec) [    -12005.0261] [Branch lengths     ]
. (   96 sec) [    -12005.0261] [Topology           ]
. (   97 sec) [    -12005.0251] [Topology           ]
. (   98 sec) [    -12005.0249] [Topology           ]
. (   98 sec) [    -12005.0249] [Alpha              ][  0.571155]
. (   98 sec) [    -12005.0249] [Topology           ]
. (   99 sec) [    -12005.0249] [Topology           ]
. (   99 sec) [    -12005.0249] [Alpha              ][  0.571155]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -12005.024877.

. Printing the most likely tree in file 'proteic_M1380_9x1558_2003.phy_phyml_tree.txt'...


. Time used 0h1m47s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
103.64user 0.00system 1:47.80elapsed 96%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps