..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1381_9x1557_2003.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 695 patterns found. (out of a total of 1557 sites) 

. 829 sites without polymorphism (53.24%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 12Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    0 sec) [    -12145.2942] [Alpha              ][  0.516381]
. (   15 sec) [    -12144.5726] [ 1445] [depth=    1]
. (   15 sec) [    -12137.3493] [ 1446] [depth=    1]
. (   17 sec) [    -12136.2702] [ 1449] [depth=    1]
. (   20 sec) [    -12109.0248] [ 1447] [depth=    4]
. (   20 sec) [    -12107.1936] [ 1435] [depth=    2]
. (   21 sec) [    -12104.4152] [ 1441] [depth=    1]
. (   24 sec) [    -12096.2444] [ 1435] [depth=    1]
. (   24 sec) [    -12085.3919] [Branch lengths     ]
. (   25 sec) [    -12084.5912] [Alpha              ][  0.567344]
. (   37 sec) [    -12081.3240] [ 1439] [depth=    1]
. (   59 sec) [    -12078.1403] [Branch lengths     ]
. (   59 sec) [    -12078.1389] [Alpha              ][  0.569594]
. (   96 sec) [    -12078.0023] [Branch lengths     ]
. (   97 sec) [    -12078.0023] [Topology           ]
. (   98 sec) [    -12077.9982] [Topology           ]
. (   99 sec) [    -12077.9975] [Topology           ]
. (  100 sec) [    -12077.9975] [Alpha              ][  0.569594]
. (  100 sec) [    -12077.9975] [Topology           ]
. (  101 sec) [    -12077.9973] [Topology           ]
. (  101 sec) [    -12077.9973] [Alpha              ][  0.569594]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -12077.997340.

. Printing the most likely tree in file 'proteic_M1381_9x1557_2003.phy_phyml_tree.txt'...


. Time used 0h1m52s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
103.05user 0.00system 1:51.92elapsed 92%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps