..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1383_11x1561_2003.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 753 patterns found. (out of a total of 1561 sites) 

. 798 sites without polymorphism (51.12%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 17Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    1 sec) [    -13794.2183] [Alpha              ][  0.500960]
. (   10 sec) [    -13782.5689] [ 1759] [depth=    5]
. (   11 sec) [    -13782.4236] [ 1768] [depth=    1]
. (   18 sec) [    -13744.2723] [ 1766] [depth=    4]
. (   34 sec) [    -13741.5417] [ 1756] [depth=    1]
. (   35 sec) [    -13738.9218] [ 1759] [depth=    1]
. (   35 sec) [    -13733.3053] [ 1752] [depth=    1]
. (   36 sec) [    -13729.4253] [ 1754] [depth=    3]
. (   36 sec) [    -13720.7420] [ 1756] [depth=    1]
. (   50 sec) [    -13704.0239] [Branch lengths     ]
. (   51 sec) [    -13704.0188] [Alpha              ][  0.504302]
. (  122 sec) [    -13702.9844] [Branch lengths     ]
. (  122 sec) [    -13702.9844] [Topology           ]
. (  123 sec) [    -13702.8836] [Topology           ]
. (  125 sec) [    -13702.8611] [Topology           ]
. (  126 sec) [    -13702.8534] [Topology           ]
. (  128 sec) [    -13702.8506] [Topology           ]
. (  129 sec) [    -13702.8496] [Topology           ]
. (  130 sec) [    -13702.8492] [Topology           ]
. (  131 sec) [    -13702.8321] [Alpha              ][  0.510445]
. (  131 sec) [    -13702.8321] [Topology           ]
. (  132 sec) [    -13702.8313] [Topology           ]
. (  132 sec) [    -13702.8313] [Alpha              ][  0.510445]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -13702.831293.

. Printing the most likely tree in file 'proteic_M1383_11x1561_2003.phy_phyml_tree.txt'...


. Time used 0h2m23s

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140.83user 0.00system 2:23.40elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps