.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1392_57x430_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 389 patterns found. (out of a total of 430 sites) . 150 sites without polymorphism (34.88%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 54Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 2 sec) [ -8287.8174] [Alpha ][ 0.500960] . ( 77 sec) [ -8282.0664] [ 1252] [depth= 1] . ( 78 sec) [ -8281.7063] [ 1254] [depth= 1] . ( 99 sec) [ -8276.3109] [ 1251] [depth= 2] . ( 459 sec) [ -8271.1817] [ 1250] [depth= 1] . ( 460 sec) [ -8268.4324] [ 1249] [depth= 1] . ( 483 sec) [ -8258.8412] [ 1248] [depth= 2] . ( 527 sec) [ -8251.3287] [ 1246] [depth= 3] . ( 529 sec) [ -8250.9587] [ 1247] [depth= 1] . ( 575 sec) [ -8250.1630] [ 1247] [depth= 1] . ( 598 sec) [ -8248.6685] [ 1246] [depth= 1] . ( 618 sec) [ -8248.2108] [ 1245] [depth= 1] . ( 620 sec) [ -8247.4062] [ 1246] [depth= 1] . ( 643 sec) [ -8247.0949] [ 1252] [depth= 1] . ( 645 sec) [ -8242.7485] [ 1246] [depth= 1] . ( 646 sec) [ -8242.4610] [ 1246] [depth= 1] . ( 647 sec) [ -8242.1911] [ 1246] [depth= 1] . ( 766 sec) [ -8236.7812] [ 1246] [depth= 3] . ( 767 sec) [ -8235.1006] [ 1244] [depth= 1] . ( 768 sec) [ -8234.3124] [ 1244] [depth= 1] . ( 788 sec) [ -8234.2205] [ 1244] [depth= 2] . ( 953 sec) [ -8232.4381] [ 1247] [depth= 1] . ( 956 sec) [ -8231.9045] [ 1248] [depth= 1] . ( 981 sec) [ -8231.0221] [ 1247] [depth= 1] . ( 982 sec) [ -8218.6603] [ 1247] [depth= 4] . ( 983 sec) [ -8217.7507] [ 1247] [depth= 1] . ( 1027 sec) [ -8216.7629] [ 1246] [depth= 3] . ( 1028 sec) [ -8216.0254] [ 1242] [depth= 2] . ( 1075 sec) [ -8213.0349] [ 1241] [depth= 1] . ( 1078 sec) [ -8208.0196] [ 1240] [depth= 1] . ( 1131 sec) [ -8204.5451] [ 1241] [depth= 1] . ( 1154 sec) [ -8204.4716] [ 1243] [depth= 1] . ( 1155 sec) [ -8204.1264] [ 1244] [depth= 2] . ( 1218 sec) [ -8202.9399] [ 1244] [depth= 1] . ( 1220 sec) [ -8202.5180] [ 1247] [depth= 2] . ( 1315 sec) [ -8202.0104] [ 1247] [depth= 1] . ( 1380 sec) [ -8201.9906] [ 1247] [depth= 2] . ( 1381 sec) [ -8199.8550] [ 1247] [depth= 3] . ( 1382 sec) [ -8199.6950] [ 1247] [depth= 3] . ( 1385 sec) [ -8199.5763] [ 1247] [depth= 1] . ( 1426 sec) [ -8199.4815] [ 1247] [depth= 3] . ( 1448 sec) [ -8199.4692] [ 1247] [depth= 1] . ( 1542 sec) [ -8173.7318] [Branch lengths ] . ( 1544 sec) [ -8173.5130] [Alpha ][ 0.527383] . ( 3304 sec) [ -8172.2508] [ 1247] [depth= 3] . ( 3385 sec) [ -8169.9215] [ 1246] [depth= 2] . ( 3562 sec) [ -8166.8750] [Branch lengths ] . ( 3563 sec) [ -8166.8170] [Alpha ][ 0.541239] . ( 5339 sec) [ -8166.0384] [Branch lengths ] . ( 5339 sec) [ -8166.0384] [Topology ] . ( 5348 sec) [ -8165.9181] [Topology ] . ( 5356 sec) [ -8165.8641] [Topology ] . ( 5365 sec) [ -8165.8316] [Topology ] . ( 5374 sec) [ -8165.8112] [Topology ] . ( 5382 sec) [ -8165.7982] [Topology ] . ( 5391 sec) [ -8165.7899] [Topology ] . ( 5392 sec) [ -8165.7659] [Alpha ][ 0.550553] . ( 5393 sec) [ -8165.7659] [Topology ] . ( 5401 sec) [ -8165.7582] [Topology ] . ( 5410 sec) [ -8165.7533] [Topology ] . ( 5419 sec) [ -8165.7501] [Topology ] . ( 5427 sec) [ -8165.7481] [Topology ] . ( 5436 sec) [ -8165.7468] [Topology ] . ( 5444 sec) [ -8165.7459] [Topology ] . ( 5446 sec) [ -8165.7458] [Alpha ][ 0.551273] . ( 5446 sec) [ -8165.7458] [Topology ] . ( 5455 sec) [ -8165.7451] [Topology ] . ( 5456 sec) [ -8165.7451] [Alpha ][ 0.551273] . Checking for NNIs, optimizing five branches... . ( 5511 sec) [ -8165.5909] [Topology ] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -8165.590889. . Printing the most likely tree in file 'proteic_M1392_57x430_2003.phy_phyml_tree.txt'... . Time used 1h32m47s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 3745.43user 0.00system 1:32:48elapsed 67%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps