..........................                                      
 ooooooooooooooooooooooooooooo        CURRENT SETTINGS        ooooooooooooooooooooooooooooooooooo
                                 ..........................                                      

                . Sequence filename : 				 proteic_M1499_22x513_2003.phy
                . Data type :             			 aa
                . Sequence format : 				 interleaved
                . Number of data sets : 			 1
                . Nb of bootstrapped data sets : 		 0
                . Model name : 					 WAG
                . Proportion of invariable sites :		 0.000000
                . Number of subst. rate categs : 		 4
                . Gamma distribution parameter : 		 estimated
                . 'Middle' of each rate class  : 		 mean
                . Amino acid equilibrium frequencies : 		 model
                . Optimise tree topology : 			 yes
                . Tree topology search : 			 SPRs
                . Starting tree : 				 BioNJ
                . Add random input tree : 			 no
                . Optimise branch lengths : 			 yes
                . Optimise substitution model parameters : 	 yes
                . Run ID : 					 none

 oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo



. Compressing sequences...

. 440 patterns found. (out of a total of 513 sites) 

. 87 sites without polymorphism (16.96%).

. Computing pairwise distances...

. Building BioNJ tree...

. This analysis requires at least 22Mo of memory space.

. Maximizing likelihood (using SPR moves)...

. (    0 sec) [    -12557.6395] [Alpha              ][  0.856477]
. (   60 sec) [    -12555.7312] [ 2338] [depth=    1]
. (   61 sec) [    -12555.3621] [ 2338] [depth=    1]
. (   65 sec) [    -12552.4390] [ 2338] [depth=    1]
. (   66 sec) [    -12543.7453] [ 2338] [depth=    1]
. (   69 sec) [    -12536.4678] [ 2338] [depth=    1]
. (   74 sec) [    -12533.0242] [ 2339] [depth=    1]
. (   74 sec) [    -12530.6027] [ 2340] [depth=    1]
. (   75 sec) [    -12525.0215] [ 2339] [depth=    1]
. (   89 sec) [    -12524.3564] [ 2343] [depth=    1]
. (   93 sec) [    -12513.4581] [ 2339] [depth=    1]
. (  105 sec) [    -12509.8724] [ 2341] [depth=    1]
. (  118 sec) [    -12507.5321] [ 2339] [depth=    1]
. (  122 sec) [    -12481.1962] [Branch lengths     ]
. (  123 sec) [    -12479.6864] [Alpha              ][  0.969158]
. (  285 sec) [    -12475.3112] [Branch lengths     ]
. (  285 sec) [    -12475.3112] [Topology           ]
. (  287 sec) [    -12473.0541] [Topology           ]
. (  289 sec) [    -12472.0492] [Topology           ]
. (  291 sec) [    -12471.8833] [Topology           ]
. (  293 sec) [    -12471.8153] [Topology           ]
. (  294 sec) [    -12471.7806] [Topology           ]
. (  296 sec) [    -12471.7614] [Topology           ]
. (  298 sec) [    -12471.7506] [Topology           ]
. (  298 sec) [    -12471.6554] [Alpha              ][  0.999427]
. (  299 sec) [    -12471.6554] [Topology           ]
. (  300 sec) [    -12471.6478] [Topology           ]
. (  302 sec) [    -12471.6437] [Topology           ]
. (  304 sec) [    -12471.6414] [Topology           ]
. (  306 sec) [    -12471.6401] [Topology           ]
. (  308 sec) [    -12471.6393] [Topology           ]
. (  308 sec) [    -12471.6393] [Alpha              ][  1.000426]
. (  308 sec) [    -12471.6393] [Topology           ]
. (  310 sec) [    -12471.6388] [Topology           ]
. (  310 sec) [    -12471.6388] [Alpha              ][  1.000426]

. Checking for NNIs, optimizing five branches...


. Log likelihood of the current tree: -12471.638827.

. Printing the most likely tree in file 'proteic_M1499_22x513_2003.phy_phyml_tree.txt'...


. Time used 0h5m26s

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
321.99user 0.00system 5:26.83elapsed 98%CPU (0avgtext+0avgdata 0maxresident)k
0inputs+0outputs (0major+0minor)pagefaults 0swaps