.......................... ooooooooooooooooooooooooooooo CURRENT SETTINGS ooooooooooooooooooooooooooooooooooo .......................... . Sequence filename : proteic_M1504_37x547_2003.phy . Data type : aa . Sequence format : interleaved . Number of data sets : 1 . Nb of bootstrapped data sets : 0 . Model name : WAG . Proportion of invariable sites : 0.000000 . Number of subst. rate categs : 4 . Gamma distribution parameter : estimated . 'Middle' of each rate class : mean . Amino acid equilibrium frequencies : model . Optimise tree topology : yes . Tree topology search : SPRs . Starting tree : BioNJ . Add random input tree : no . Optimise branch lengths : yes . Optimise substitution model parameters : yes . Run ID : none oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo . Compressing sequences... . 429 patterns found. (out of a total of 547 sites) . 136 sites without polymorphism (24.86%). . Computing pairwise distances... . Building BioNJ tree... . This analysis requires at least 38Mo of memory space. . Maximizing likelihood (using SPR moves)... . ( 1 sec) [ -12688.8590] [Alpha ][ 0.659988] . ( 332 sec) [ -12684.2203] [ 2077] [depth= 1] . ( 333 sec) [ -12676.3688] [ 2073] [depth= 1] . ( 334 sec) [ -12674.9374] [ 2075] [depth= 1] . ( 338 sec) [ -12673.8585] [ 2073] [depth= 1] . ( 343 sec) [ -12665.9111] [ 2074] [depth= 2] . ( 343 sec) [ -12660.8542] [ 2079] [depth= 1] . ( 345 sec) [ -12660.0933] [ 2079] [depth= 1] . ( 346 sec) [ -12659.7274] [ 2074] [depth= 1] . ( 492 sec) [ -12659.6120] [ 2075] [depth= 1] . ( 493 sec) [ -12656.1804] [ 2074] [depth= 1] . ( 562 sec) [ -12655.2707] [ 2079] [depth= 1] . ( 594 sec) [ -12651.6896] [ 2069] [depth= 2] . ( 597 sec) [ -12643.9909] [ 2079] [depth= 2] . ( 626 sec) [ -12636.3114] [ 2080] [depth= 1] . ( 630 sec) [ -12635.5569] [ 2076] [depth= 2] . ( 663 sec) [ -12632.9702] [ 2076] [depth= 3] . ( 680 sec) [ -12622.7642] [ 2075] [depth= 1] . ( 682 sec) [ -12598.0541] [Branch lengths ] . ( 683 sec) [ -12595.9178] [Alpha ][ 0.756856] . ( 979 sec) [ -12595.1261] [ 2070] [depth= 1] . ( 1053 sec) [ -12594.9217] [ 2070] [depth= 1] . ( 1063 sec) [ -12594.6710] [ 2068] [depth= 1] . ( 1233 sec) [ -12594.5756] [ 2070] [depth= 1] . ( 1317 sec) [ -12594.3289] [ 2071] [depth= 1] . ( 1374 sec) [ -12586.7272] [Branch lengths ] . ( 1375 sec) [ -12586.6912] [Alpha ][ 0.770832] . ( 2088 sec) [ -12586.0158] [Branch lengths ] . ( 2089 sec) [ -12586.0158] [Topology ] . ( 2095 sec) [ -12585.9213] [Topology ] . ( 2100 sec) [ -12585.8824] [Topology ] . ( 2106 sec) [ -12585.8592] [Topology ] . ( 2112 sec) [ -12585.8452] [Topology ] . ( 2117 sec) [ -12585.8367] [Topology ] . ( 2123 sec) [ -12585.8314] [Topology ] . ( 2124 sec) [ -12585.8017] [Alpha ][ 0.783705] . ( 2124 sec) [ -12585.8017] [Topology ] . ( 2130 sec) [ -12585.7950] [Topology ] . ( 2136 sec) [ -12585.7911] [Topology ] . ( 2141 sec) [ -12585.7887] [Topology ] . ( 2147 sec) [ -12585.7872] [Topology ] . ( 2153 sec) [ -12585.7863] [Topology ] . ( 2153 sec) [ -12585.7860] [Alpha ][ 0.784863] . ( 2154 sec) [ -12585.7860] [Topology ] . ( 2159 sec) [ -12585.7854] [Topology ] . ( 2160 sec) [ -12585.7854] [Alpha ][ 0.784863] . Checking for NNIs, optimizing five branches... . Log likelihood of the current tree: -12585.785357. . Printing the most likely tree in file 'proteic_M1504_37x547_2003.phy_phyml_tree.txt'... . Time used 0h36m42s oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo 1399.15user 0.00system 36:42.93elapsed 63%CPU (0avgtext+0avgdata 0maxresident)k 0inputs+0outputs (0major+0minor)pagefaults 0swaps